% Copyright or © or Copr. CREATIS laboratory, Lyon, France.
%
% Contributor: Olivier Bernard, Associate Professor at the french
% engineering university INSA (Institut National des Sciences Appliquees)
% and a member of the CREATIS-LRMN laboratory (CNRS 5220, INSERM U630,
% INSA, Claude Bernard Lyon 1 University) in France (Lyon).
%
% Date of creation: 8th of October 2009
%
% E-mail of the author: olivier.bernard@creatis.insa-lyon.fr
%
% This software is a computer program whose purpose is to evaluate the
% performance of different level-set based segmentation algorithms in the
% context of image processing (and more particularly on biomedical
% images).
%
% The software has been designed for two main purposes.
% - firstly, CREASEG allows you to use six different level-set methods.
% These methods have been chosen in order to work with a wide range of
% level-sets. You can select for instance classical methods such as
% Caselles or Chan & Vese level-set, or more recent approaches such as the
% one developped by Lankton or Bernard.
% - finally, the software allows you to compare the performance of the six
% level-set methods on different images. The performance can be evaluated
% either visually, or from measurements (either using the Dice coefficient
% or the PSNR value) between a reference and the results of the
% segmentation.
%
% The level-set segmentation platform is citationware. If you are
% publishing any work, where this program has been used, or which used one
% of the proposed level-set algorithms, please remember that it was
% obtained free of charge. You must reference the papers shown below and
% the name of the CREASEG software must be mentioned in the publication.
%
% CREASEG software
% "T. Dietenbeck, M. Alessandrini, D. Friboulet, O. Bernard. CREASEG: a
% free software for the evaluation of image segmentation algorithms based
% on level-set. In IEEE International Conference On Image Processing.
% Hong Kong, China, 2010."
%
% Bernard method
% "O. Bernard, D. Friboulet, P. Thevenaz, M. Unser. Variational B-Spline
% Level-Set: A Linear Filtering Approach for Fast Deformable Model
% Evolution. In IEEE Transactions on Image Processing. volume 18, no. 06,
% pp. 1179-1191, 2009."
%
% Caselles method
% "V. Caselles, R. Kimmel, and G. Sapiro. Geodesic active contours.
% International Journal of Computer Vision, volume 22, pp. 61-79, 1997."
%
% Chan & Vese method
% "T. Chan and L. Vese. Active contours without edges. IEEE Transactions on
% Image Processing. volume10, pp. 266-277, February 2001."
%
% Lankton method
% "S. Lankton, A. Tannenbaum. Localizing Region-Based Active Contours. In
% IEEE Transactions on Image Processing. volume 17, no. 11, pp. 2029-2039,
% 2008."
%
% Li method
% "C. Li, C.Y. Kao, J.C. Gore, Z. Ding. Minimization of Region-Scalable
% Fitting Energy for Image Segmentation. In IEEE Transactions on Image
% Processing. volume 17, no. 10, pp. 1940-1949, 2008."
%
% Shi method
% "Yonggang Shi, William Clem Karl. A Real-Time Algorithm for the
% Approximation of Level-Set-Based Curve Evolution. In IEEE Transactions
% on Image Processing. volume 17, no. 05, pp. 645-656, 2008."
%
% This software is governed by the BSD license and
% abiding by the rules of distribution of free software.
%
% As a counterpart to the access to the source code and rights to copy,
% modify and redistribute granted by the license, users are provided only
% with a limited warranty and the software's author, the holder of the
% economic rights, and the successive licensors have only limited
% liability.
%
% In this respect, the user's attention is drawn to the risks associated
% with loading, using, modifying and/or developing or reproducing the
% software by the user in light of its specific status of free software,
% that may mean that it is complicated to manipulate, and that also
% therefore means that it is reserved for developers and experienced
% professionals having in-depth computer knowledge. Users are therefore
% encouraged to load and test the software's suitability as regards their
% requirements in conditions enabling the security of their systems and/or
% data to be ensured and, more generally, to use and operate it in the
% same conditions as regards security.
%
%------------------------------------------------------------------------
function creaseg_gui(ud)
%-- Checking the Matlab version and if the Spline Toolbox is available
a = ver;
ud.Spline = 0;
i = 1;
while ( (i <= size(a,2)) && (~strcmp(a(i).Name,'MATLAB')) )
i = i+ 1;
end
idx = find(a(i).Version == '.');
v1 = str2double(a(i).Version(1:idx-1)); v2 = str2double(a(i).Version(idx+1:end));
if ( (v1 >= 7) && (v2 >= 6) )
ud.Version = 1;
else
ud.Version = 0;
end
ud.LastPlot = '';
%-- create main figure
ss = get(0,'ScreenSize');
ud.gcf = figure('position',[300 200 ss(3)*2/3 ss(4)*2/3],'menubar','none','tag','creaseg','color',[87/255 86/255 84/255],'name','CREASEG','NumberTitle','off');
%-- create main menu
h1 = uimenu('parent',ud.gcf,'label','File');
uimenu('parent',h1,'label','Open','callback','creaseg_loadimage');
uimenu('parent',h1,'label','Close','callback',{@closeInterface});
uimenu('parent',h1,'label','Save screen','callback',{@saveResult,1});
uimenu('parent',h1,'label','Save result','callback',{@saveResult,3},'separator','on');
%-- create Algorithm item submenu
h1 = uimenu('parent',ud.gcf,'label','Algorithms');
h2 = uimenu('parent',h1,'label','1-Caselles','callback',{@manageAlgoItem,1},'ForegroundColor',[255/255, 0/255, 0/255],'Checked','on');
h3 = uimenu('parent',h1,'label','2-Chan & Vese','callback',{@manageAlgoItem,2});
h4 = uimenu('parent',h1,'label','3-Chunming Li','callback',{@manageAlgoItem,3});
h5 = uimenu('parent',h1,'label','4-Lankton','callback',{@manageAlgoItem,4});
h6 = uimenu('parent',h1,'label','5-Bernard','callback',{@manageAlgoItem,5});
h7 = uimenu('parent',h1,'label','6-Shi','callback',{@manageAlgoItem,6});
h8 = uimenu('parent',h1,'label','7-Personal Algorithm','callback',{@manageAlgoItem,7});
h9 = uimenu('parent',h1,'label','C-Comparison Mode','callback',{@manageCompItem,1},'separator','on');
ud.handleMenuAlgorithms = [h2;h3;h4;h5;h6;h7;h8;h9];
S = ['1-Caselles ';'2-Chan & Vese';'3-Chunming Li'; ...
'4-Lankton ';'5-Bernard ';'6-Shi '; ...
'7-Personal ';'C-Comparison '];
ud.handleMenuAlgorithmsName = cellstr(S);
%-- create Tool item submenu
h1 = uimenu('parent',ud.gcf,'label','Tool');
uimenu('parent',h1,'label','Draw Initial Region','callback',{@manageAction,1});
uimenu('parent',h1,'label','Run','callback','creaseg_run');
%-- create Help item submenu
h1 = uimenu('parent',ud.gcf,'label','Help');
uimenu('parent',h1,'label','About Creaseg','callback',{@open_help});
uimenu('parent',h1,'label','About the author','callback',{@open_author},'separator','on');
%-- create Image Area
ud.imagePanel = uipanel('units','normalized','position',[0.35 0.05 0.62 0.80],'BorderType','line','Backgroundcolor',[37/255 37/255 37/255],'HighlightColor',[0/255 0/255 0/255],'tag','imgPanel');
ud.gca = axes('parent',ud.imagePanel,'Tag','mainAxes','DataAspectRatio',[1 1 1],'units','normalized','position',[0.05 0.05 0.9 0.9],'visible','off','tag','mainAxes');
ud.img = image([1 256],[1 256],repmat(37/255,[256,256,3]),'parent',ud.gca,'Tag','mainImg');
axis(ud.gca,'equal');
set(ud.gca,'visible','off');
pos = get(ud.gca,'position');
colormap(gray(256));
ud.imageId = ud.img;
ud.imageMask(1,:) = pos;
ud.panelIcons = uipanel('parent',ud.gcf,'units','normalized','position',[0.35 0.87 0.42 0.08],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255],'tag','panelIcons','userdata',0);
ud.panelText = uipanel('parent',ud.gcf,'units','normalized','position',[0.80 0.87 0.17 0.08],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
%--
load('misc/icons/drawInitialization.mat');
ha1 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.10 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[160/255 130/255 95/255],'tooltip','draw initial region','Callback',{@manageAction,1});
load('misc/icons/run2.mat');
ha2 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.22 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','Backgroundcolor',[240/255 173/255 105/255],'tooltip','Run','Callback',{@manageAction,2});
load('misc/icons/arrow.mat');
ha3 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.34 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'tooltip','Pointer','Callback',{@manageAction,3});
load('misc/icons/zoomIn.mat');
ha4 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.46 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'tooltip','Zoom In','Callback',{@manageAction,4});
load('misc/icons/zoomOut.mat');
ha5 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.58 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'tooltip','Zoom Out','Callback',{@manageAction,5});
load('misc/icons/pan.mat');
ha6 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.70 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'tooltip','Pan','Callback',{@manageAction,6});
load('misc/icons/info.mat');
ha7 = uicontrol('parent',ud.panelIcons,'units','normalized','position',[0.82 0.25 0.08 0.5],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'tooltip','Image Info','Callback',{@manageAction,7});
ud.buttonAction = [ha1;ha2;ha3;ha4;ha5;ha6;ha7];
%--
ud.txtPositionIntensity = uicontrol('parent',ud.panelText,'style','text','enable','inactive','fontsize',8,...
'backgroundcolor',[113/255 113/255 113/255],'foregroundcolor',[.9 .9 .9],'horizontalalignment','left');
SetTextIntensityPosition(ud);
ud.txtInfo1 = text('Parent',ud.gca,'units','normalized','position',[0.05,0.95], ...
'string','','color',[255/255 255/255 0/255],'FontSize',8);
ud.txtInfo2 = text('Parent',ud.gca,'units','normalized','position',[0.05,0.90], ...
'string','','color',[255/255 255/255 0/255],'FontSize',8);
ud.txtInfo3 = text('Parent',ud.gca,'units','normalized','position',[0.05,0.85], ...
'string','','color',[255/255 255/255 0/255],'FontSize',8);
ud.txtInfo4 = text('Parent',ud.gca,'units','normalized','position',[0.05,0.80], ...
'string','','color',[255/255 255/255 0/255],'FontSize',8);
ud.txtInfo5 = text('Parent',ud.gca,'units','normalized','position',[0.05,0.75], ...
'string','','color',[255/255 255/255 0/255],'FontSize',8);
%-- create Toolbar
hToolbar = uitoolbar('Parent',ud.gcf,'HandleVisibility','callback');
load('misc/icons/open.mat');
uipushtool('Parent',hToolbar,'TooltipString','Open File','CData',cdata,'HandleVisibility','callback','ClickedCallback','creaseg_loadimage');
load('misc/icons/screenshot.mat');
uipushtool('Parent',hToolbar,'TooltipString','Save Screen','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@saveResult,1});
load('misc/icons/save.mat');
uipushtool('Parent',hToolbar,'TooltipString','Save data','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@saveResult,3});
load('misc/icons/one.mat');
ud.AlgoIcon(:,:,:,1) = cdata;
hp1 = uitoggletool('Parent',hToolbar,'Separator','on','TooltipString','Caselles','State','On','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,1});
load('misc/icons/two.mat');
ud.AlgoIcon(:,:,:,2) = cdata;
hp2 = uitoggletool('Parent',hToolbar,'TooltipString','ChanVese','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,2});
load('misc/icons/three.mat');
ud.AlgoIcon(:,:,:,3) = cdata;
hp3 = uitoggletool('Parent',hToolbar,'TooltipString','Chunming Li','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,3});
load('misc/icons/four.mat');
ud.AlgoIcon(:,:,:,4) = cdata;
hp4 = uitoggletool('Parent',hToolbar,'TooltipString','Lankton','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,4});
load('misc/icons/five.mat');
ud.AlgoIcon(:,:,:,5) = cdata;
hp5 = uitoggletool('Parent',hToolbar,'TooltipString','Bernard','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,5});
load('misc/icons/six.mat');
ud.AlgoIcon(:,:,:,6) = cdata;
hp6 = uitoggletool('Parent',hToolbar,'TooltipString','Shi','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,6});
load('misc/icons/seven.mat');
ud.AlgoIcon(:,:,:,7) = cdata;
hp7 = uitoggletool('Parent',hToolbar,'TooltipString','Personal Algorithm','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageAlgoItem,7});
load('misc/icons/comp.mat');
ud.AlgoIcon(:,:,:,8) = cdata;
hp8 = uitoggletool('Parent',hToolbar,'Separator','on','TooltipString','Comparison Mode','CData',cdata,'HandleVisibility','callback','ClickedCallback',{@manageCompItem,1});
load('misc/icons/brushR.mat');
hp9 = uipushtool('Parent',hToolbar,'Separator','on','TooltipString','Change contour color','CData',cdata,'HandleVisibility','callback','userdata',1,'ClickedCallback',{@changeContourColor});
ud.handleContourColor = hp9;
load('misc/icons/help.mat');
uipushtool('Parent',hToolbar,'Separator','on','TooltipString','Help','CData',cdata,'HandleVisibility','callback','userdata',1,'ClickedCallback',{@open_help});
ud.handleIconAlgo = [hp1;hp2;hp3;hp4;hp5;hp6;hp7;hp8];
ud.colorSpec = {'r','g','b','y','w','k'};
%-- Create Icon for selected algorithm (in Comparison Mode)
load('misc/icons/oneSel.mat');
ud.AlgoIconSel(:,:,:,1) = cdata;
load('misc/icons/twoSel.mat');
ud.AlgoIconSel(:,:,:,2) = cdata;
load('misc/icons/threeSel.mat');
ud.AlgoIconSel(:,:,:,3) = cdata;
load('misc/icons/fourSel.mat');
ud.AlgoIconSel(:,:,:,4) = cdata;
load('misc/icons/fiveSel.mat');
ud.AlgoIconSel(:,:,:,5) = cdata;
load('misc/icons/sixSel.mat');
ud.AlgoIconSel(:,:,:,6) = cdata;
load('misc/icons/sevenSel.mat');
ud.AlgoIconSel(:,:,:,7) = cdata;
%-- INTERFACE -> SEGMENTATION CONTROL
h1 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h2 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h3 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h4 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h5 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h6 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h7 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h8 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
h9 = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'Visible','off','BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
hi = uipanel('parent',ud.gcf,'position',[0.03 0.05 0.30 0.9],'BorderType','line','Backgroundcolor',[87/255 86/255 84/255],'HighlightColor',[0/255 0/255 0/255]);
ud.handleAlgoConfig = [h1;h2;h3;h4;h5;h6;h7;h8;h9;hi];
%-- INTERFACE -> INITIALIZATION CONTROL
hi1 = uicontrol('parent',hi,'units','normalized','position',[0 0.92 1 0.05],'Style','text','String','Initialization','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
hi2 = uipanel('parent',hi,'units','normalized','position',[0.07 0.05 0.85 0.85],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
load('misc/icons/rectangle.mat');
hi3 = uicontrol('parent',hi2,'units','normalized','position',[0.35 0.80 0.30 0.05],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'Callback',{@creaseg_managedrawing,1});
load('misc/icons/multirectangles.mat');
hi4 = uicontrol('parent',hi2,'units','normalized','position',[0.35 0.70 0.30 0.05],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'Callback',{@creaseg_managedrawing,2});
load('misc/icons/ellipse.mat');
hi5 = uicontrol('parent',hi2,'units','normalized','position',[0.35 0.60 0.30 0.05],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'Callback',{@creaseg_managedrawing,3});
load('misc/icons/multiellipses.mat');
hi6 = uicontrol('parent',hi2,'units','normalized','position',[0.35 0.50 0.30 0.05],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'Callback',{@creaseg_managedrawing,4});
load('misc/icons/manual.mat');
hi7 = uicontrol('parent',hi2,'units','normalized','position',[0.35 0.40 0.30 0.05],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'Callback',{@creaseg_managedrawing,5});
load('misc/icons/multimanuals.mat');
hi8 = uicontrol('parent',hi2,'units','normalized','position',[0.35 0.30 0.30 0.05],'Style','pushbutton','CData',cdata,'Enable','On','BackgroundColor',[240/255 173/255 105/255],'Callback',{@creaseg_managedrawing,6});
ud.handleInit = [hi1;hi2;hi3;hi4;hi5;hi6;hi7;hi8];
%-- INTERFACE -> CASELLES CONTROL
h11 = uicontrol('parent',h1,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Caselles','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h12 = uipanel('parent',h1,'units','normalized','position',[0.07 0.75 0.85 0.15],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h13 = uicontrol('parent',h12,'units','normalized','position',[0.07 0.58 0.5 0.23],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h14 = uicontrol('parent',h12,'units','normalized','position',[0.60 0.61 0.3 0.23],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h15 = uicontrol('parent',h12,'units','normalized','position',[0.07 0.13 0.5 0.23],'Style','text','String','Convergence thres.','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h16 = uicontrol('parent',h12,'units','normalized','position',[0.60 0.16 0.3 0.23],'Style','edit','String','2','BackgroundColor',[240/255 173/255 105/255]);
h17 = uicontrol('parent',h1,'units','normalized','position',[0.1 0.66 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h18 = uipanel('parent',h1,'units','normalized','position',[0.07 0.05 0.85 0.61],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h181 = uicontrol('parent',h18,'units','normalized','position',[0.07 0.88 0.5 0.05],'Style','text','String','Propagation term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h182 = uicontrol('parent',h18,'units','normalized','position',[0.55 0.88 0.3 0.055],'Style','edit','String','1','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoCaselles = [h11;h12;h13;h14;h15;h16;h17;h18;h181;h182];
%-- INTERFACE -> CHAN VESE CONTROL
h21 = uicontrol('parent',h2,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Chan & Vese','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h22 = uipanel('parent',h2,'units','normalized','position',[0.07 0.75 0.85 0.15],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h23 = uicontrol('parent',h22,'units','normalized','position',[0.07 0.58 0.5 0.23],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h24 = uicontrol('parent',h22,'units','normalized','position',[0.60 0.61 0.3 0.23],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h25 = uicontrol('parent',h22,'units','normalized','position',[0.07 0.13 0.5 0.23],'Style','text','String','Convergence thres.','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h26 = uicontrol('parent',h22,'units','normalized','position',[0.60 0.16 0.3 0.23],'Style','edit','String','2','units','normalized','BackgroundColor',[240/255 173/255 105/255]);
h27 = uicontrol('parent',h2,'units','normalized','position',[0.1 0.66 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h28 = uipanel('parent',h2,'units','normalized','position',[0.07 0.05 0.85 0.61],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h281 = uicontrol('parent',h28,'units','normalized','position',[0.07 0.88 0.5 0.05],'Style','text','String','Curvature term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h282 = uicontrol('parent',h28,'units','normalized','position',[0.55 0.88 0.3 0.055],'Style','edit','String','0.2','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoChanVese = [h21;h22;h23;h24;h25;h26;h27;h28;h281;h282];
%-- INTERFACE -> LI CONTROL
h31 = uicontrol('parent',h3,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Chunming Li','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h32 = uipanel('parent',h3,'units','normalized','position',[0.07 0.75 0.85 0.15],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h33 = uicontrol('parent',h32,'units','normalized','position',[0.07 0.58 0.5 0.23],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h34 = uicontrol('parent',h32,'units','normalized','position',[0.60 0.61 0.3 0.23],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h35 = uicontrol('parent',h32,'units','normalized','position',[0.07 0.13 0.5 0.23],'Style','text','String','Convergence thres.','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h36 = uicontrol('parent',h32,'units','normalized','position',[0.60 0.16 0.3 0.23],'Style','edit','String','2','units','normalized','BackgroundColor',[240/255 173/255 105/255]);
h37 = uicontrol('parent',h3,'units','normalized','position',[0.1 0.66 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h38 = uipanel('parent',h3,'units','normalized','position',[0.07 0.05 0.85 0.61],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h39 = uicontrol('parent',h38,'units','normalized','position',[0.07 0.88 0.5 0.05],'Style','text','String','Length term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h391 = uicontrol('parent',h38,'units','normalized','position',[0.55 0.88 0.3 0.055],'Style','edit','String','0.003','BackgroundColor',[240/255 173/255 105/255]);
h392 = uicontrol('parent',h38,'units','normalized','position',[0.07 0.78 0.5 0.05],'Style','text','String','Regularization term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h393 = uicontrol('parent',h38,'units','normalized','position',[0.55 0.78 0.3 0.055],'Style','edit','String','1','BackgroundColor',[240/255 173/255 105/255]);
h394 = uicontrol('parent',h38,'units','normalized','position',[0.07 0.68 0.5 0.05],'Style','text','String','Scale term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h395 = uicontrol('parent',h38,'units','normalized','position',[0.55 0.68 0.3 0.055],'Style','edit','String','7','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoLi = [h31;h32;h33;h34;h35;h36;h37;h38;h39;h391;h392;h393;h394;h395];
%-- INTERFACE -> LANKTON CONTROL
h41 = uicontrol('parent',h4,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Lankton','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h42 = uipanel('parent',h4,'units','normalized','position',[0.07 0.75 0.85 0.15],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h43 = uicontrol('parent',h42,'units','normalized','position',[0.07 0.58 0.5 0.23],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h44 = uicontrol('parent',h42,'units','normalized','position',[0.60 0.61 0.3 0.23],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h45 = uicontrol('parent',h42,'units','normalized','position',[0.07 0.13 0.5 0.23],'Style','text','String','Convergence thres.','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h46 = uicontrol('parent',h42,'units','normalized','position',[0.60 0.16 0.3 0.23],'Style','edit','String','2','units','normalized','BackgroundColor',[240/255 173/255 105/255]);
h47 = uicontrol('parent',h4,'units','normalized','position',[0.1 0.66 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h48 = uipanel('parent',h4,'units','normalized','position',[0.07 0.05 0.85 0.61],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h49 = uicontrol('parent',h48,'units','normalized','position',[0.07 0.88 0.5 0.05],'Style','text','String','Feature type','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h491 = uicontrol('parent',h48,'units','normalized','position',[0.55 0.90 0.39 0.04],'Style','popupmenu','String',{'Yezzi','Chan Vese'},'FontSize',9,'BackgroundColor',[240/255, 173/255, 105/255]);
h492 = uicontrol('parent',h48,'units','normalized','position',[0.07 0.78 0.5 0.05],'Style','text','String','Neighborhood','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h493 = uicontrol('parent',h48,'units','normalized','position',[0.55 0.80 0.39 0.04],'Style','popupmenu','String',{'Circle','Square'},'FontSize',9,'BackgroundColor',[240/255, 173/255, 105/255]);
h494 = uicontrol('parent',h48,'units','normalized','position',[0.07 0.68 0.5 0.05],'Style','text','String','Curvature term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h495 = uicontrol('parent',h48,'units','normalized','position',[0.55 0.68 0.3 0.06],'Style','edit','String','0.2','BackgroundColor',[240/255 173/255 105/255]);
h496 = uicontrol('parent',h48,'units','normalized','position',[0.07 0.58 0.5 0.05],'Style','text','String','Radius term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h497 = uicontrol('parent',h48,'units','normalized','position',[0.55 0.58 0.3 0.06],'Style','edit','String','9','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoLankton = [h41;h42;h43;h44;h45;h46;h47;h48;h49;h491;h492;h493;h494;h495;h496;h497];
%-- INTERFACE -> BERNARD CONTROL
h51 = uicontrol('parent',h5,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Bernard','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h52 = uipanel('parent',h5,'units','normalized','position',[0.07 0.75 0.85 0.15],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h53 = uicontrol('parent',h52,'units','normalized','position',[0.07 0.58 0.5 0.23],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h54 = uicontrol('parent',h52,'units','normalized','position',[0.60 0.61 0.3 0.23],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h55 = uicontrol('parent',h52,'units','normalized','position',[0.07 0.13 0.5 0.23],'Style','text','String','Convergence thres.','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h56 = uicontrol('parent',h52,'units','normalized','position',[0.60 0.16 0.3 0.23],'Style','edit','String','2','units','normalized','BackgroundColor',[240/255 173/255 105/255]);
h57 = uicontrol('parent',h5,'units','normalized','position',[0.1 0.66 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h58 = uipanel('parent',h5,'units','normalized','position',[0.07 0.05 0.85 0.61],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h59 = uicontrol('parent',h58,'units','normalized','position',[0.07 0.88 0.5 0.05],'Style','text','String','Scale term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h591 = uicontrol('parent',h58,'units','normalized','position',[0.55 0.88 0.3 0.055],'Style','edit','String','1','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoBernard = [h51;h52;h53;h54;h55;h56;h57;h58;h59;h591];
%-- INTERFACE -> SHI CONTROL
h61 = uicontrol('parent',h6,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Shi','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h62 = uipanel('parent',h6,'units','normalized','position',[0.07 0.83 0.85 0.07],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h621 = uicontrol('parent',h62,'units','normalized','position',[0.07 0.2 0.5 0.5],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h622 = uicontrol('parent',h62,'units','normalized','position',[0.60 0.25 0.3 0.5],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h63 = uicontrol('parent',h6,'units','normalized','position',[0.1 0.76 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h64 = uipanel('parent',h6,'units','normalized','position',[0.07 0.05 0.85 0.71],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h641 = uicontrol('parent',h64,'units','normalized','position',[0.07 0.89 0.5 0.05],'Style','text','String','Na term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h642 = uicontrol('parent',h64,'units','normalized','position',[0.55 0.90 0.3 0.047],'Style','edit','String','30','BackgroundColor',[240/255 173/255 105/255]);
h643 = uicontrol('parent',h64,'units','normalized','position',[0.07 0.81 0.5 0.05],'Style','text','String','Ns term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h644 = uicontrol('parent',h64,'units','normalized','position',[0.55 0.82 0.3 0.047],'Style','edit','String','3','BackgroundColor',[240/255 173/255 105/255]);
h645 = uicontrol('parent',h64,'units','normalized','position',[0.07 0.73 0.5 0.05],'Style','text','String','Sigma term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h646 = uicontrol('parent',h64,'units','normalized','position',[0.55 0.74 0.3 0.047],'Style','edit','String','3','BackgroundColor',[240/255 173/255 105/255]);
h647 = uicontrol('parent',h64,'units','normalized','position',[0.07 0.65 0.5 0.05],'Style','text','String','Ng term','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h648 = uicontrol('parent',h64,'units','normalized','position',[0.55 0.66 0.3 0.047],'Style','edit','String','1','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoShi = [h61;h62;h621;h622;h63;h64;h641;h642;h643;h644;h645;h646;h647;h648];
%-- INTERFACE -> PERSONAL ALGO CONTROL
h71 = uicontrol('parent',h7,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Personal Algorithm','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h72 = uipanel('parent',h7,'units','normalized','position',[0.07 0.75 0.85 0.15],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h73 = uicontrol('parent',h72,'units','normalized','position',[0.07 0.58 0.5 0.23],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h74 = uicontrol('parent',h72,'units','normalized','position',[0.60 0.61 0.3 0.23],'Style','edit','String','200','BackgroundColor',[240/255 173/255 105/255]);
h75 = uicontrol('parent',h72,'units','normalized','position',[0.07 0.13 0.5 0.23],'Style','text','String','Convergence thres.','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h76 = uicontrol('parent',h72,'units','normalized','position',[0.60 0.16 0.3 0.23],'Style','edit','String','2','BackgroundColor',[240/255 173/255 105/255]);
h77 = uicontrol('parent',h7,'units','normalized','position',[0.1 0.66 0.85 0.04],'Style','text','String','Specific parameters','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h78 = uipanel('parent',h7,'units','normalized','position',[0.07 0.05 0.85 0.61],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h781 = uicontrol('parent',h78,'units','normalized','position',[0.07 0.89 0.5 0.05],'Style','text','String','Parameter 1','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h782 = uicontrol('parent',h78,'units','normalized','position',[0.55 0.90 0.3 0.047],'Style','edit','String','1','BackgroundColor',[240/255 173/255 105/255]);
h783 = uicontrol('parent',h78,'units','normalized','position',[0.07 0.81 0.5 0.05],'Style','text','String','Parameter 2','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h784 = uicontrol('parent',h78,'units','normalized','position',[0.55 0.82 0.3 0.047],'Style','edit','String','1','BackgroundColor',[240/255 173/255 105/255]);
ud.handleAlgoPersonal = [h71;h72;h73;h74;h75;h76;h77;h78;h781;h782;h783;h784];
%-- INTERFACE -> COMPARISON CONTROL
h81 = uicontrol('parent',h8,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Comparison Mode','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h82 = uipanel('parent',h8,'units','normalized','position',[0.07 0.83 0.85 0.07],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h821 = uicontrol('parent',h82,'units','normalized','position',[0.07 0.2 0.5 0.5],'Style','text','String','Number of iterations','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h822 = uicontrol('parent',h82,'units','normalized','position',[0.60 0.25 0.3 0.5],'Style','edit','String','200','callback',{@setAllNbIt},'BackgroundColor',[240/255 173/255 105/255]);
h83 = uicontrol('parent',h8,'units','normalized','position',[0.1 0.77 0.85 0.03],'Style','text','String','Algorithms','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h84 = uipanel('parent',h8,'units','normalized','position',[0.07 0.52 0.85 0.25],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h841 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.83 0.85 0.12],'Style','checkbox','String','1- Caselles','FontSize',9,'callback',{@SetIconSelected,1},'BackgroundColor',[113/255 113/255 113/255]);
h842 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.70 0.85 0.12],'Style','checkbox','String','2- Chan & Vese','FontSize',9,'callback',{@SetIconSelected,2},'BackgroundColor',[113/255 113/255 113/255]);
h843 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.57 0.85 0.12],'Style','checkbox','String','3- Chunming Li','FontSize',9,'callback',{@SetIconSelected,3},'BackgroundColor',[113/255 113/255 113/255]);
h844 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.44 0.85 0.12],'Style','checkbox','String','4- Lankton','FontSize',9,'callback',{@SetIconSelected,4},'BackgroundColor',[113/255 113/255 113/255]);
h845 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.31 0.85 0.12],'Style','checkbox','String','5- Bernard','FontSize',9,'callback',{@SetIconSelected,5},'BackgroundColor',[113/255 113/255 113/255]);
h846 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.18 0.85 0.12],'Style','checkbox','String','6- Shi','FontSize',9,'callback',{@SetIconSelected,6},'BackgroundColor',[113/255 113/255 113/255]);
h847 = uicontrol('parent',h84,'units','normalized','position',[0.07 0.05 0.85 0.12],'Style','checkbox','String','7- Personal Algorithm','FontSize',9,'callback',{@SetIconSelected,7},'BackgroundColor',[113/255 113/255 113/255]);
h85 = uicontrol('parent',h8,'units','normalized','position',[0.1 0.46 0.85 0.03],'Style','text','String','Reference','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h86 = uipanel('parent',h8,'units','normalized','position',[0.07 0.34 0.85 0.12],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h861 = uicontrol('parent',h86,'units','normalized','position',[0.15 0.58 0.30 0.31],'Style','pushbutton','String','Load','Backgroundcolor',[240/255 173/255 105/255],'callback','creaseg_loadreference','Enable','off');
h862 = uicontrol('parent',h86,'units','normalized','position',[0.53 0.58 0.30 0.31],'Style','pushbutton','String','Create','Backgroundcolor',[240/255 173/255 105/255],'callback','creaseg_createreference','Enable','off');
h863 = uicontrol('parent',h86,'units','normalized','position',[0.07 0.18 0.50 0.25],'Style','text','String','Interpolation Type','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h864 = uicontrol('parent',h86,'units','normalized','position',[0.63 0.20 0.30 0.25],'Style','popupmenu','String',{'Polygon','Spline'},'FontSize',9,'BackgroundColor',[240/255, 173/255, 105/255]);
h87 = uipanel('parent',h8,'units','normalized','position',[0.07 0.16 0.85 0.12],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h871 = uicontrol('parent',h87,'units','normalized','position',[0.07 0.55 0.40 0.29],'Style','text','String','Similarity Criteria','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[113/255 113/255 113/255]);
h872 = uicontrol('parent',h87,'units','normalized','position',[0.53 0.58 0.40 0.32],'Style','popupmenu','String',{'Dice','PSNR','Hausdorff','MSSD'},'FontSize',9,'BackgroundColor',[240/255, 173/255, 105/255]);
h873 = uicontrol('parent',h87,'units','normalized','position',[0.07 0.18 0.85 0.32],'Style','checkbox','String','Intermediate Output','BackgroundColor',[113/255 113/255 113/255],'Value',1);
h88 = uicontrol('parent',h8,'units','normalized','position',[0.3 0.086 0.40 0.035],'Style','pushbutton','String','See Results','callback',{@manageCompItem,2},'Enable','off','Backgroundcolor',[240/255 173/255 105/255]);
ud.handleAlgoComparison = [h81;h82;h821;h822;h83;h84;h841;h842;h843;h844;h845;h846;h847;h85;h86;h861;h862;h863;h864;h87;h871;h872;h873;h88];
%-- INTERFACE -> RESULTS CONTROL
h91 = uicontrol('parent',h9,'units','normalized','position',[0.0 0.92 1.0 0.05],'Style','text','String','Results','FontSize',10,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
if ud.Version
h92 = uitable('parent',h9,'units','normalized','position',[0.07 0.62 0.85 0.3],'ColumnName',{'Calculation Time', 'Dice'},'ColumnFormat',{'Bank', 'Bank'},'RowName',{'1','2','3','4','5','6','7'});
else
h92 = uicontrol('parent',h9,'units','normalized','position',[0.07 0.62 0.85 0.3],'Style','text','String','Results cannot be displayed here because your Matlab version do not support uitable. Therefore the results are saved in the file results.txt',...
'FontSize',12,'HorizontalAlignment','center','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 0 0]);
end
h93 = uicontrol('parent',h9,'units','normalized','position',[0.1 0.55 0.85 0.03],'Style','text','String','Visual Criteria','FontSize',9,'HorizontalAlignment','left','Backgroundcolor',[87/255 86/255 84/255],'Foregroundcolor',[255/255 255/255 255/255]);
h94 = uipanel('parent',h9,'units','normalized','position',[0.07 0.25 0.85 0.3],'BorderType','line','Backgroundcolor',[113/255 113/255 113/255],'HighlightColor',[0/255 0/255 0/255]);
h941 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.87 0.85 0.11],'Style','checkbox','String','Reference (White)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h942 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.75 0.85 0.11],'Style','checkbox','String','1- Caselles (Yellow)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h943 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.63 0.85 0.11],'Style','checkbox','String','2- Chan & Vese (Blue)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h944 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.51 0.85 0.11],'Style','checkbox','String','3- Chunming Li (Cyan)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h945 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.39 0.85 0.11],'Style','checkbox','String','4- Lankton (Red)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h946 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.27 0.85 0.11],'Style','checkbox','String','5- Bernard (Green)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h947 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.15 0.85 0.11],'Style','checkbox','String','6- Shi (Magenta)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h948 = uicontrol('parent',h94,'units','normalized','position',[0.07 0.03 0.85 0.11],'Style','checkbox','String','7- Personal Algorithm (Black)','FontSize',9,'callback',{@creaseg_plotresults},'BackgroundColor',[113/255 113/255 113/255]);
h95 = uicontrol('parent',h9,'units','normalized','position',[0.3 0.086 0.4 0.035],'Style','pushbutton','String','See Parameters','callback',{@manageCompItem,1},'Backgroundcolor',[240/255 173/255 105/255]);
ud.handleAlgoResults = [h91;h92;h93;h94;h941;h942;h943;h944;h945;h946;h947;h948;h95];
if ud.Version
SetTableColumnWidth(ud);
end
%-- create structure to image handle
fd = [];
fd.data = [];
fd.visu = [];
fd.tagImage = 0;
fd.levelset = [];
fd.visuTmp = [];
fd.levelsetTmp = [];
fd.translation = [0 0];
fd.info = [];
fd.reference = [];
fd.points = [];
fd.pointsRef = [];
fd.handleRect = {};
fd.handleElliRect = {};
fd.handleManual = {};
fd.handleReference = {};
fd.method = '';
fd.drawingManualFlag = 0;
fd.drawingMultiManualFlag = 0;
%-- Set function to special events
set(ud.imageId,'userdata',fd);
set(ud.gcf,'WindowButtonMotionFcn',{@creaseg_mouseMove},'visible','on','HandleVisibility','callback','interruptible','off');
set(ud.gcf,'CloseRequestFcn',{@closeInterface});
%-- ATTACH UD STRUCTURE TO FIG HANDLE
set(ud.gcf,'userdata',ud);
set(ud.gcf,'ResizeFcn',@figResize);
%---------------------------------------------------------------------
%-- AUXILIARY FUNCTIONS ----------------------------------------------
%---------------------------------------------------------------------
%------------------------------------------------------------------
function manageAlgoItem(src,evt,num)
fig = gcbf;
ud = get(fig,'userdata');
%-- cancel drawing mode
set(ud.buttonAction(1),'background',[240/255 173/255 105/255]);
for k=3:size(ud.handleInit,1)
set(ud.handleInit(k),'BackgroundColor',[240/255 173/255 105/255]);
end
%-- check whether the create button of comparison mode is unselect
if ( get(ud.handleAlgoComparison(17),'BackgroundColor')~=[160/255 130/255 95/255] )
set(ud.gcf,'WindowButtonDownFcn','');
set(ud.gcf,'WindowButtonUpFcn','');
%-- put pointer button to select
set(ud.buttonAction(3),'BackgroundColor',[160/255 130/255 95/255]);
end
%-- put run button to unselect
set(ud.buttonAction(2),'BackgroundColor',[240/255 173/255 105/255]);
%--
if strcmp(get(ud.handleIconAlgo(8),'State'),'off')||(get(ud.handleAlgoComparison(6+num),'Value')==0)
if strcmp(get(ud.handleIconAlgo(8),'State'),'on')
EnableDisableNbit(ud,'on');
end
for k=1:size(ud.handleAlgoConfig,1)
set(ud.handleAlgoConfig(k),'Visible','off');
if k<size(ud.handleAlgoConfig,1)-1
set(ud.handleIconAlgo(k),'State','off');
end
end
set(ud.handleAlgoConfig(num),'Visible','on');
set(ud.handleIconAlgo(num),'State','on');
%--
setAllIcon(ud);
%--
for k=1:size(ud.handleMenuAlgorithms,1)
set(ud.handleMenuAlgorithms(k),'label',ud.handleMenuAlgorithmsName{k},'ForegroundColor',[0/255, 0/255, 0/255],'Checked','off');
end
set(ud.handleMenuAlgorithms(num),'label',ud.handleMenuAlgorithmsName{num},'ForegroundColor',[255/255, 0/255, 0/255],'Checked','on');
else
for k=1:size(ud.handleAlgoConfig,1)
set(ud.handleAlgoConfig(k),'Visible','off');
if k<size(ud.handleAlgoConfig,1)-1
set(ud.handleIconAlgo(k),'State','off');
end
end
set(ud.handleAlgoConfig(num),'Visible','on');
set(ud.handleIconAlgo(8),'State','on');
end
%--
function manageCompItem(src, evt, num)
fig = gcbf;
ud = get(fig,'userdata');
EnableDisableNbit(ud,'off');
%-- cancel drawing mode
set(ud.buttonAction(1),'background',[240/255 173/255 105/255]);
for k=3:size(ud.handleInit,1)
set(ud.handleInit(k),'BackgroundColor',[240/255 173/255 105/255]);
end
%-- check whether the create button of comparison mode is unselect
if ( get(ud.handleAlgoComparison(17),'BackgroundColor')~=[160/255 130/255 95/255] )
set(ud.gcf,'WindowButtonDownFcn','');
set(ud.gcf,'WindowButtonUpFcn','');
%-- put pointer button to select
set(ud.buttonAction(3),'BackgroundColor',[160/255 130/255 95/255]);
end
%-- put run button to unselect
set(ud.buttonAction(2),'BackgroundColor',[240/255 173/255 105/255]);
%--
for k=1:size(ud.handleAlgoConfig,1)
set(ud.handleAlgoConfig(k),'Visible','off');
if k<size(ud.handleAlgoConfig,1)-1
set(ud.handleIconAlgo(k),'State','off');
end
end
if num == 1
set(ud.handleAlgoConfig(8),'Visible','on');
set(ud.handleIconAlgo(8),'State','on');
else
set(ud.handleAlgoConfig(9),'Visible','on');
set(ud.handleIconAlgo(8),'State','on')
creaseg_plotresults(src,evt);
end
for k=1:size(ud.handleMenuAlgorithms,1)-1
set(ud.handleMenuAlgorithms(k),'label',ud.handleMenuAlgorithmsName{k},'ForegroundColor',[0/255, 0/255, 0/255],'Checked','off');
end
set(ud.handleMenuAlgorithms(8),'label',ud.handleMenuAlgorithmsName{8},'ForegroundColor',[255/255, 0/255, 0/255],'Checked','on');
setAllIcon(ud);
setAllNbIt(src,evt);
%--
function manageInit(src,evt)
fig = gcbf;
ud = get(fig,'userdata');
for k=1:size(ud.handleAlgoConfig,1)
set(ud.handleAlgoConfig(k),'Visible','off');
end
set(ud.handleAlgoConfig(end),'Visible','on');
%--
function closeInterface(src,evt)
delete(gcbf);
%--
function figResize(src,evt)
fig = gcbf;
ud = get(fig,'userdata');
SetTextIntensityPosition(ud);
if ud.Version
SetTableColumnWidth(ud);
end
%--
function SetTableColumnWidth(ud)
ss = get(ud.gcf,'position');
posPanel = get(ud.handleAlgoConfig(9),'position');
posTable = get(ud.handleAlgoResults(2),'position');
w = ss(3)*posPanel(3)*posTable(3)-35;
set(ud.handleAlgoResults(2),'ColumnWidth',{w/2,w/2});
%--
function SetTextIntensityPosition(ud)
ss = get(ud.gcf,'position');
pos = get(ud.panelText,'position');
w = ss(3)*pos(3);
h = ss(4)*pos(4);
a = w/5;
c = w-2*a;
b = 3*h/8;
d = h-2*b;
set(ud.txtPositionIntensity,'units','pixels','position',[a b c d]);
%-- save images
function saveResult(src,evt,num)
fig = gcbf;
ud = get(fig,'userdata');
fd = get(ud.imageId,'userdata');
img = fd.visu;
method = fd.method;
cl = ud.colorSpec(get(ud.handleContourColor,'userdata'));
S = method;
switch method
case 'Reference'
levelset = fd.reference;
case 'Comparison'
if num == 1
num = 2;
end
levelset = zeros(size(img,1),size(img,2),8);
levelset(:,:,1) = fd.reference;
levelset(:,:,2:end) = fd.seg;
cl = {'w','y','b','c','r','g','m','k'};
S = ['Reference ';'Caselles ';'Chan & Vese';'Chunming Li'; ...
'Lankton ';'Bernard ';'Shi ';'Personal '];
otherwise
levelset = fd.levelset;
end
method = S;
switch num
case 1 %-- save screen (one contour)
if ( ~isempty(img) )
img = img - min(img(:));
img = uint8(255*img/max(img(:)));
imgrgb = repmat(img,[1 1 3]);
if ( (~isempty(levelset)) && (size(img,1)==size(levelset,1)) && (size(img,2)==size(levelset,2)))
axes(get(ud.imageId,'parent'));
delete(findobj(get(ud.imageId,'parent'),'type','line'));
hold on; [c,h] = contour(levelset,[0 0],cl{1},'Linewidth',3); hold off;
delete(h);
tt = round(c);
%--
test = isequal(size(c,2),0);
while (test==false)
s = c(2,1);
if ( s == (size(c,2)-1) )
t = c;
hold on; plot(t(1,2:end)',t(2,2:end)',cl{1},'Linewidth',3);
test = true;
else
t = c(:,2:s+1);
hold on; plot(t(1,1:end)',t(2,1:end)',cl{1},'Linewidth',3);
c = c(:,s+2:end);
end
end
%--
tt = tt(:, (tt(1,:)~=0) & (tt(1,:)>=1) & (tt(1,:)<=size(img,2)) ...
& (tt(2,:)>=1) & (tt(2,:)<=size(img,1)));
imgContour = repmat(0,size(img));
for k=1:size(tt,2)
imgContour(tt(2,k),tt(1,k),1) = 1;
end
if ( min(size(img)) <= 225 )
se = strel('arbitrary',[1 1; 1 1]);
elseif ( min(size(img)) <= 450 )
se = strel('disk',1);
elseif ( min(size(img)) <= 775 )
se = strel('disk',2);
else
se = strel('disk',3);
end
imgContour = imdilate(imgContour,se);
[y,x] = find(imgContour~=0);
switch cl{1}
case 'r'
val = [255,0,0];
case 'g'
val = [0,255,0];
case 'b'
val = [0,0,255];
case 'y'
val = [255,255,0];
case 'w'
val = [255,255,255];
case 'k'
val = [0,0,0];
end
for k=1:size(x,1)
imgrgb(y(k),x(k),1) = val(1);
imgrgb(y(k),x(k),2) = val(2);
imgrgb(y(k),x(k),3) = val(3);
end
set(ud.imageId,'userdata',fd);
set(fig,'userdata',ud);
end
[filename, pathname] = uiputfile({'*.png','Png (*.png)';...
'*.bmp','Bmp (*.bmp)';'*.tif','Tif (*.tif)';...
'*.gif','Gif (*.gif)';'*.jpg','Jpg (*.jpg)'},'Save as');
if ( ~isempty(pathname) && ~isempty(filename) )
imwrite(imgrgb,[pathname filename]);
end
end
case 2 %-- save screen (Multiple contours)
if ( ~isempty(img) )
img = img - min(img(:));
img = uint8(255*img/max(img(:)));
imgrgb = repmat(img,[1 1 3]);
if ( (~isempty(levelset)) && (size(img,1)==size(levelset,1)) && (size(img,2)==size(levelset,2)))
for i = 1:1:size(levelset,3)
if (max(max(levelset(:,:,i)))~=0) && (get(ud.handleAlgoResults(4+i),'Value'))
axes(get(ud.imageId,'parent'));
hold on; [c,h] = contour(levelset(:,:,i),[0 0],cl{i},'Linewidth',3); hold off;
delete(h);
tt = round(c);
%--
test = isequal(size(c,2),0);
while (test==false)
s = c(2,1);
if ( s == (size(c,2)-1) )
t = c;
hold on; plot(t(1,2:end)',t(2,2:end)',cl{i},'Linewidth',3);
test = true;
else
t = c(:,2:s+1);
hold on; plot(t(1,1:end)',t(2,1:end)',cl{i},'Linewidth',3);
c = c(:,s+2:end);
end
end
%--
tt = tt(:, (tt(1,:)~=0) & (tt(1,:)>=1) & (tt(1,:)<=size(img,2)) ...
& (tt(2,:)>=1) & (tt(2,:)<=size(img,1)));
imgContour = repmat(0,size(img));
for k=1:size(tt,2)
imgContour(tt(2,k),tt(1,k),1) = 1;
end
if ( min(size(img)) <= 225 )
se = strel('arbitrary',[1 1; 1 1]);
elseif ( min(size(img)) <= 450 )
se = strel('disk',1);
elseif ( min(size(img)) <= 775 )
se = strel('disk',2);
else
se = strel('disk',3);
end
imgContour = imdilate(imgContour,se);
[y,x] = find(imgContour~=0);
switch cl{i}
case 'r'
val = [255,0,0];
case 'g'
val = [0,255,0];
case 'b'
val = [0,0,255];
case 'y'
val = [255,255,0];
case 'w'
val = [255,255,255];
case 'k'
val = [0,0,0];
case 'm'
val = [255,0,255];
case 'c'
val = [0,255,255];
end
for k=1:size(x,1)
imgrgb(y(k),x(k),1) = val(1);
imgrgb(y(k),x(k),2) = val(2);
imgrgb(y(k),x(k),3) = val(3);
end
set(ud.imageId,'userdata',fd);
set(fig,'userdata',ud);
end
end
end
[filename, pathname] = uiputfile({'*.png','Png (*.png)';...
'*.bmp','Bmp (*.bmp)';'*.tif','Tif (*.tif)';...
'*.gif','Gif (*.gif)';'*.jpg','Jpg (*.jpg)'},'Save as');
if ( ~isempty(pathname) && ~isempty(filename) )
imwrite(imgrgb,[pathname filename]);
end
end
case 3 %-- save data
if ( ~isempty(img) )
if ( (~isempty(levelset)) )
result = struct('img',img,'levelset',levelset, 'Method', method);
else
result = img;
end
[filename, pathname] = uiputfile({'*.mat','MAT-files (*.mat)'},'Save as');
if ( ~isempty(pathname) && ~isempty(filename) )
save([pathname filename],'result');
end
end
end
%-- change color of contour display on the image
function changeContourColor(src,evt)
fig = findobj(0,'tag','creaseg');
ud = get(fig,'userdata');
fd = get(ud.imageId,'userdata');
pos = get(src,'userdata');
if (pos==6)
pos = 1;
else
pos = pos+1;
end
filename = {'brushR' 'brushG' 'brushB' 'brushY' 'brushW' 'brushK'};
load(['misc/icons/' filename{pos} '.mat']);
set(src,'cdata',cdata,'userdata',pos);
%--
if ( ~isempty(fd.data) )
switch ud.LastPlot
case 'levelset'
if ( (~isempty(fd.levelset)) && (size(fd.data,1)==size(fd.levelset,1)) ...
&& (size(fd.data,2)==size(fd.levelset,2)))
cl = ud.colorSpec(pos);
if ( size(fd.handleRect,2) > 0 )
for k=size(fd.handleRect,2):-1:1
set(fd.handleRect{k},'EdgeColor',cl{1});
end
elseif ( size(fd.handleElliRect,2) > 0 )
for k=size(fd.handleElliRect,2):-1:1
set(fd.handleElliRect{k}(2),'color',cl{1});
end
elseif ( size(fd.handleManual,2) > 0 )
for k=size(fd.handleManual,2):-1:1
if ( (size(fd.handleManual{k},1)==1) && (fd.handleManual{k}>0) )
set(fd.handleManual{k},'color',cl{1});
end
end
else
axes(get(ud.imageId,'parent'));
delete(findobj(get(ud.imageId,'parent'),'type','line'));
hold on; [c,h] = contour(fd.levelset,[0 0],cl{1},'Linewidth',3); hold off;
delete(h);
test = isequal(size(c,2),0);
while (test==false)
s = c(2,1);
if ( s == (size(c,2)-1) )
t = c;
hold on; plot(t(1,2:end)',t(2,2:end)',cl{1},'Linewidth',3);
test = true;
else
t = c(:,2:s+1);
hold on; plot(t(1,1:end)',t(2,1:end)',cl{1},'Linewidth',3);
c = c(:,s+2:end);
end
end
end
end
case 'reference'
if ( (~isempty(fd.reference)) && (size(fd.data,1)==size(fd.reference,1)) ...
&& (size(fd.data,2)==size(fd.reference,2)))
cl = ud.colorSpec(pos);
axes(get(ud.imageId,'parent'));
delete(findobj(get(ud.imageId,'parent'),'type','line'));
hold on; [c,h] = contour(fd.reference,[0 0],cl{1},'Linewidth',3); hold off;
delete(h);
test = isequal(size(c,2),0);
while (test==false)
s = c(2,1);
if ( s == (size(c,2)-1) )
t = c;
hold on; plot(t(1,2:end)',t(2,2:end)',cl{1},'Linewidth',3);
test = true;
else
t = c(:,2:s+1);
hold on; plot(t(1,1:end)',t(2,1:end)',cl{1},'Linewidth',3);
c = c(:,s+2:end);
end
end
end
end
end
%--
function SetIconSelected(src,evt,num)
fig = gcbf;
ud = get(fig,'userdata');
if get(ud.handleAlgoComparison(6+num),'Value')
set(ud.handleIconAlgo(num),'cdata',ud.AlgoIconSel(:,:,:,num))
set(ud.handleMenuAlgorithms(num),'label',ud.handleMenuAlgorithmsName{num},'ForegroundColor',[0/255, 153/255, 51/255],'Checked','on');
else
set(ud.handleIconAlgo(num),'cdata',ud.AlgoIcon(:,:,:,num))
set(ud.handleMenuAlgorithms(num),'label',ud.handleMenuAlgorithmsName{num},'ForegroundColor',[0/255, 0/255, 0/255],'Checked','off');
end
%--
function setAllIcon(ud)
for i=1:1:7
if (get(ud.handleAlgoComparison(6+i),'Value')) && strcmp(get(ud.handleIconAlgo(8),'State'),'on')
set(ud.handleIconAlgo(i),'cdata',ud.AlgoIconSel(:,:,:,i));
set(ud.handleMenuAlgorithms(i),'label',ud.handleMenuAlgorithmsName{i},'ForegroundColor',[0/255, 153/255, 51/255],'Checked','on');
else
set(ud.handleIconAlgo(i),'cdata',ud.AlgoIcon(:,:,:,i));
set(ud.handleMenuAlgorithms(i),'label',ud.handleMenuAlgorithmsName{i},'ForegroundColor',[0/255, 0/255, 0/255],'Checked','off');
end
end
%--
function EnableDisableNbit(ud,s)
set(ud.handleAlgoCaselles(4),'Enable',s);
set(ud.handleAlgoChanVese(4),'Enable',s);
set(ud.handleAlgoLi(4),'Enable',s);
set(ud.handleAlgoLankton(4),'Enable',s);
set(ud.handleAlgoBernard(4),'Enable',s);
set(ud.handleAlgoShi(4),'Enable',s);
set(ud.handleAlgoPersonal(4),'Enable',s);
%--
function setAllNbIt(src,evt)
fig = gcbf;
ud = get(fig,'userdata');
NbIt = get(ud.handleAlgoComparison(4),'String');
set(ud.handleAlgoCaselles(4),'String',NbIt);
set(ud.handleAlgoChanVese(4),'String',NbIt);
set(ud.handleAlgoLi(4),'String',NbIt);
set(ud.handleAlgoLankton(4),'String',NbIt);
set(ud.handleAlgoBernard(4),'String',NbIt);
set(ud.handleAlgoShi(4),'String',NbIt);
set(ud.handleAlgoPersonal(4),'String',NbIt);
%--
function creaseg_inittype(src, evt)
fig = gcbf;
ud = get(fig,'userdata');
switch get(ud.handleInit(4),'Value')
case {1,2}
InitText_OnOff(ud,0);
case 3
InitText_OnOff(ud,1);
set(ud.handleInit(5),'String','Center');
set(ud.handleInit(7),'String','Xc');
set(ud.handleInit(9),'String','Yc');
set(ud.handleInit(13),'String','X Axis');
set(ud.handleInit(15),'String','Y Axis');
init_param(ud,get(ud.handleInit(4),'Value'));
case 4
InitText_OnOff(ud,1);
set(ud.handleInit(5),'String','Center');
set(ud.handleInit(7),'String','Xc');
set(ud.handleInit(9),'String','Yc');
set(ud.handleInit(13),'String','Length');
set(ud.handleInit(15),'String','Width');
init_param(ud,get(ud.handleInit(4),'Value'));
case 5
InitText_OnOff(ud,1);
set(ud.handleInit(5),'String','Space');
set(ud.handleInit(7),'String','X');
set(ud.handleInit(9),'String','Y');
set(ud.handleInit(13),'String','Radius');
set(ud.handleInit(15),'Enable','Off');
set(ud.handleInit(16),'Enable','Off');
init_param(ud,get(ud.handleInit(4),'Value'));
case 6
InitText_OnOff(ud,1);
set(ud.handleInit(5),'String','Space');
set(ud.handleInit(7),'String','X');
set(ud.handleInit(9),'String','Y');
set(ud.handleInit(13),'String','Length');
set(ud.handleInit(15),'String','Width');
init_param(ud,get(ud.handleInit(4),'Value'));
end
%--
function InitText_OnOff(ud,type)
if type
set(ud.handleInit(7),'Enable','On');
set(ud.handleInit(8),'Enable','On');
set(ud.handleInit(9),'Enable','On');
set(ud.handleInit(10),'Enable','On');
set(ud.handleInit(13),'Enable','On');
set(ud.handleInit(14),'Enable','On');
set(ud.handleInit(15),'Enable','On');
set(ud.handleInit(16),'Enable','On');
else
set(ud.handleInit(7),'Enable','Off');
set(ud.handleInit(8),'Enable','Off');
set(ud.handleInit(9),'Enable','Off');
set(ud.handleInit(10),'Enable','Off');
set(ud.handleInit(13),'Enable','Off');
set(ud.handleInit(14),'Enable','Off');
set(ud.handleInit(15),'Enable','Off');
set(ud.handleInit(16),'Enable','Off');
end
%--
function init_param(ud, method)
fd = get(ud.imageId,'userdata');
if ( isempty(fd.data) )
return;
end
switch method
case {3, 4}
set(ud.handleInit(8),'string',num2str(size(fd.data,2)/2));
set(ud.handleInit(10),'string',num2str(size(fd.data,1)/2));
set(ud.handleInit(14),'string',num2str(size(fd.data,2)/4));
set(ud.handleInit(16),'string',num2str(size(fd.data,1)/4));
case {5, 6}
set(ud.handleInit(8),'string',num2str(size(fd.data,2)/40));
set(ud.handleInit(10),'string',num2str(size(fd.data,1)/40));
set(ud.handleInit(14),'string',num2str(size(fd.data,2)/20));
set(ud.handleInit(16),'string',num2str(size(fd.data,1)/20));
end
%--
function open_author(src,evt)
web('http://www.creatis.insa-lyon.fr/~bernard');
%--
function open_help(src,evt)
web('http://www.creatis.insa-lyon.fr/~bernard/creaseg');
%--
function manageAction(src,evt,nbBut)
%-- parameters
fig = findobj(0,'tag','creaseg');
ud = get(fig,'userdata');
fd = get(ud.imageId,'userdata');
%-- deal with pan option
if ( (nbBut==2) || (nbBut==3) )
pan off;
end
%-- clean up all messages
if ( nbBut<7)
set(ud.txtInfo1,'string','');
set(ud.txtInfo2,'string','');
set(ud.txtInfo3,'string','');
set(ud.txtInfo4,'string','');
set(ud.txtInfo5,'string','');
end
if (nbBut==6)
if (get(ud.buttonAction(6),'background')==[160/255 130/255 95/255])
set(ud.buttonAction(6),'background',[240/255 173/255 105/255]);
else
set(ud.buttonAction(6),'background',[160/255 130/255 95/255]);
end
end
if (nbBut==7)
if (get(ud.buttonAction(7),'background')==[160/255 130/255 95/255])
set(ud.buttonAction(7),'background',[240/255 173/255 105/255]);
set(ud.txtInfo1,'string','');
set(ud.txtInfo2,'string','');
set(ud.txtInfo3,'string','');
set(ud.txtInfo4,'string','');
set(ud.txtInfo5,'string','');
else
set(ud.buttonAction(7),'background',[160/255 130/255 95/255]);
end
end
%-- ACTION
if ( (fd.tagImage == 1 ) || (nbBut == 1) )
switch nbBut
case 1 %-- Draw initial region
set(ud.buttonAction(2),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(3),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(7),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(1),'BackgroundColor',[160/255 130/255 95/255]);
%-- switch off create button of comparison mode
set(ud.handleAlgoComparison(17),'BackgroundColor',[240/255 173/255 105/255]);
%-- do corresponding action
manageInit(src,evt);
case 2 %-- Run method
set(ud.buttonAction(1),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(2),'BackgroundColor',[160/255 130/255 95/255]);
set(ud.buttonAction(6),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(7),'BackgroundColor',[240/255 173/255 105/255]);
%-- switch off create button of comparison mode
set(ud.handleAlgoComparison(17),'BackgroundColor',[240/255 173/255 105/255]);
%-- do corresponding action
creaseg_run(src,evt);
case 3 %-- Set mouse pointer to own (disable current figure option icon properties)
set(ud.buttonAction(2),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(6),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(7),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(3),'BackgroundColor',[160/255 130/255 95/255]);
%-- put drawing to unclick
for k=3:size(ud.handleInit,1)
set(ud.handleInit(k),'BackgroundColor',[240/255 173/255 105/255]);
end
%-- do corresponding action
set(ud.gcf,'WindowButtonDownFcn','');
set(ud.gcf,'WindowButtonUpFcn','');
case 4 %-- Zoom in by a factor of 2
set(ud.buttonAction(2),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(5),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(7),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(4),'BackgroundColor',[160/255 130/255 95/255]);
%-- do corresponding action
axes(get(ud.imageId,'parent'));
zoom(ud.gca,2);
case 5 %-- Zoom out by a factor of 2
set(ud.buttonAction(2),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(4),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(7),'BackgroundColor',[240/255 173/255 105/255]);
set(ud.buttonAction(5),'BackgroundColor',[160/255 130/255 95/255]);
%-- do corresponding action
axes(get(ud.imageId,'parent'));
zoom(ud.gca,0.5);
case 6 %-- Pan into main figure
%--
set(ud.buttonAction(7),'BackgroundColor',[240/255 173/255 105/255]);
%--
if (get(ud.buttonAction(6),'background')==[240/255 173/255 105/255])
%-- first pan off
pan off;
if ( get(ud.buttonAction(1),'background')==[240/255 173/255 105/255] )
if ( get(ud.handleAlgoComparison(17),'background')==[240/255 173/255 105/255] )
%-- then put pointer button to selected
set(ud.buttonAction(3),'BackgroundColor',[160/255 130/255 95/255]);
end
end
%-- then go back to manual drawing mode if any
if ( fd.drawingManualFlag == 1 )
set(ud.gcf,'WindowButtonDownFcn',{@creaseg_drawManualContour});
set(ud.gcf,'WindowButtonUpFcn','');
end
%-- then go back to multi manual drawing mode if any
if ( fd.drawingMultiManualFlag == 1 )
set(ud.gcf,'WindowButtonDownFcn',{@creaseg_drawMultiManualContours});
set(ud.gcf,'WindowButtonUpFcn','');
end
%-- then go back to reference manual drawing mode if any
if ( fd.drawingReferenceFlag == 1 )
set(ud.gcf,'WindowButtonDownFcn',{@creaseg_drawMultiReferenceContours});
set(ud.gcf,'WindowButtonUpFcn','');
end
else
%-- put pointer button to unselected
set(ud.buttonAction(3),'BackgroundColor',[240/255 173/255 105/255]);
%-- do corresponding action
set(ud.gcf,'WindowButtonDownFcn','');
set(ud.gcf,'WindowButtonUpFcn','');
axes(get(ud.imageId,'parent'));
pan(ud.gca);
end
case 7 %-- Display or not current image properties
if (get(ud.buttonAction(7),'background')==[160/255 130/255 95/255])
fd = get(ud.imageId,'userdata');
if ( ~isempty(fd.info) )
if ( isfield(fd.info,'Width') )
set(ud.txtInfo1,'string',sprintf('width:%d pixels',fd.info.Width),'color',[1 1 0]);
end
if ( isfield(fd.info,'Height') )
set(ud.txtInfo2,'string',sprintf('height:%d pixels',fd.info.Height),'color',[1 1 0]);
end
if ( isfield(fd.info,'BitDepth') )
set(ud.txtInfo3,'string',sprintf('bit depth:%d',fd.info.BitDepth),'color',[1 1 0]);
end
if ( isfield(fd.info,'XResolution') && (~isempty(fd.info.XResolution)) )
if ( isfield(fd.info,'ResolutionUnit') )
if ( strcmp(fd.info.ResolutionUnit,'meter') )
set(ud.txtInfo4,'string',sprintf('XResolution:%0.3f mm',fd.info.XResolution/1000),'color',[1 1 0]);
elseif ( strcmp(fd.info.ResolutionUnit,'millimeter') )
set(ud.txtInfo4,'string',sprintf('XResolution:%0.3f mm',fd.info.XResolution),'color',[1 1 0]);
else
set(ud.txtInfo4,'string',sprintf('XResolution:%0.3f',fd.info.XResolution),'color',[1 1 0]);
end
else
set(ud.txtInfo4,'string',sprintf('XResolution:%f',fd.info.XResolution),'color',[1 1 0]);
end
end
if ( isfield(fd.info,'YResolution') && (~isempty(fd.info.YResolution)) )
if ( isfield(fd.info,'ResolutionUnit') )
if ( strcmp(fd.info.ResolutionUnit,'meter') )
set(ud.txtInfo5,'string',sprintf('YResolution:%0.3f mm',fd.info.YResolution/1000),'color',[1 1 0]);
elseif ( strcmp(fd.info.ResolutionUnit,'millimeter') )
set(ud.txtInfo5,'string',sprintf('YResolution:%0.3f mm',fd.info.YResolution),'color',[1 1 0]);
else
set(ud.txtInfo5,'string',sprintf('YResolution:%0.3f',fd.info.YResolution),'color',[1 1 0]);
end
else
set(ud.txtInfo5,'string',sprintf('YResolution:%f',fd.info.XResolution),'color',[1 1 0]);
end
end
end
end
end
end
