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paramsNeurofit - import parameters from Neurofit

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paramsNeurofit - import parameters from Neurofit

by Cengiz Gunay

 

13 Oct 2010 (Updated 19 Oct 2010)

Extract Hodgkin-Huxley type ion channel parameters from a Neurofit report file.

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Description

Extracts parameters from fits obtained by Neurofit to voltage clamp data. Use File->Save report in Neurofit after you copy all the fitted values as actual parameters. See Neurofit web page for more information (http://www.uoguelph.ca/~awillms/neurofit/). Data units are preserved from Neurofit since they are not annotated in the report file.

MATLAB release MATLAB 7.11 (2010b)
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Updates
14 Oct 2010

Bugfix: added missing tau_h1 values, converted strings into numerics

19 Oct 2010

can now import a second set of tauh values. Also fixed parameters not having fractional parts.

Tag Activity for this File
Tag Applied By Date/Time
neurofit Cengiz Gunay 14 Oct 2010 10:57:01
hodgkinhuxley Cengiz Gunay 14 Oct 2010 10:57:01
channel Cengiz Gunay 14 Oct 2010 10:57:01
ion Cengiz Gunay 14 Oct 2010 10:57:01
voltage clamp Cengiz Gunay 14 Oct 2010 10:57:01
electrophysiology Cengiz Gunay 14 Oct 2010 10:57:01
parameter fitting Cengiz Gunay 14 Oct 2010 10:57:01
neuroscience Cengiz Gunay 14 Oct 2010 10:57:01
fit Cengiz Gunay 14 Oct 2010 10:57:01
hodgkinhuxley Dennis Puschmann 15 Oct 2010 09:07:35

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