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MSKCC CGDS Cancer Genomics Toolbox

version 1.5 (23.9 KB) by

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio.

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This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.

A tutorial ('showdemo cgdstutorial') makes it easy to get started.

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Updates

1.5

Version 1.06: Adapted to changes in web API (clinical data). Previous version no longer works correctly. Trailing '/' no longer required in URL. Updated URL in help pages. Updated tutorial for new clinical data format.

1.4

Bug fixes to cgdstutorial.m

1.3

Updates to comply with changed naming conventions for case set IDs and genetic profile IDs.

1.2

Minor update to cgdstutorial.m

1.1

v1.02 9/5/2011: Adapted to changes in web API.

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MATLAB 7.9 (R2009b)

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