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Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data

by Richard Willey

 

09 May 2011

MATLAB code for the "Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data" webinar.

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Description

This file shows how to use MATLAB and Bioinformatics Toolbox for a typical ChIP-Seq workflow. Key topics include:

Peak detection using wavelet denoising
Working with paired end short reads
Generating coverage plots

Required Products Bioinformatics Toolbox
Statistics Toolbox
MATLAB release MATLAB 7.12 (2011a)
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chipseqbioinformaticswaveletpeak detectionpaired end short read Richard Willey 10 May 2011 16:08:56
chipseqbioinformaticswaveletpeak detectionpaired end short read Kejie 11 May 2011 14:31:56

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