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Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data

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Richard Willey (view profile)

 

MATLAB code for the "Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data" webinar.

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Description

This file shows how to use MATLAB and Bioinformatics Toolbox for a typical ChIP-Seq workflow. Key topics include:

Peak detection using wavelet denoising
Working with paired end short reads
Generating coverage plots

Required Products Bioinformatics Toolbox
Statistics and Machine Learning Toolbox
MATLAB release MATLAB 7.12 (R2011a)
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27 Jul 2015 George Carlisle  

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