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Cell Segmentation and Tracking

2.3 | 4 ratings Rate this file 11 Downloads (last 30 days) File Size: 935 KB File ID: #34233 Version: 1.1
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Cell Segmentation and Tracking


Fanny (view profile)


16 Dec 2011 (Updated )

This program opens a GUI, segments and tracks cells from videos using the parallelization toolbox.

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This program has been developed in collaboration with LCSB and BIOp at EPFL, Lausanne. It is specific for a microwell experiment with brightfield pictures and GFP expressing cells pictures. It uses a well detection part, then a segmentation part using watershed and a tracking part using the hungarian method for assignment problem. This program is specific for an experiment but users would be interested to use some parts of the code for their own program.

Required Products Image Processing Toolbox
Parallel Computing Toolbox
MATLAB release MATLAB 7.13 (R2011b)
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Comments and Ratings (5)
15 Mar 2016 Jorge Vargas


02 Jul 2015 hui cheng

14 May 2012 Mia Divecha

Hi there. In your documentation, you mention an excel file (excel combinatorial file). I would love to try your program, but I can't seem to find this excel file in the folder mentioned. Is it possible to have it emailed to me? Or perhaps it's somewhere else that I can't find? Thank you! -Mia

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09 Feb 2012 ??

?? (view profile)

09 Feb 2012 ??

?? (view profile)

17 Jan 2012 1.1

Update on the description

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