Protein Array Tool

Version 2.0.0.1 (3.01 MB) by Danny Allen
Converts an image of an R&D Systems Proteome Profiler Array into a list of relative protein levels.
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Updated 31 Dec 2020

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This tool extracts the relative protein levels from an image of an R&D Systems Proteome Profiler Antibody Array.
The tool automatically finds each of the spots in the image and identifies which protein they correspond to.
A template of spot locations is initially fitted using a rigid transformation based on two automatically identified reference spots. Individual spot positions are then optimised using a local search.

The relative protein levels are displayed on screen and saved to a csv file.

Cite As

Danny Allen (2024). Protein Array Tool (https://www.mathworks.com/matlabcentral/fileexchange/35128-protein-array-tool), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2019a
Compatible with R2018b and later releases
Platform Compatibility
Windows macOS Linux
Categories
Find more on QSP, PKPD, and Systems Biology in Help Center and MATLAB Answers
Acknowledgements

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ProteinArrayTool/ProteinArrayTool/Functions

Version Published Release Notes
2.0.0.1

Minor bug fixes
2.0.0.0

New options added to improve robustness and utility.
1.0.0.0

Fixed bug which stopped it working on latest versions of matlab.