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Highlights from
ecopath_matlab: A Matlab implementation of Ecopath

  • An overview of the ecopat...
  • wraptext documentation
  • setpos.m
  • getpos.m
  • cprintf.m
  • setgetposexamples.m
  • legendflex.m
  • aggregate(x, y, fun)
    AGGREGATE Aggregate values into cell array
  • calcclusteredparams(Full,...
    CALCCLUSTEREDPARAMS Calculates new Ewe input params for clustered model
  • calcstanza(A, varargin)
    CALCSTANZA Calculate B and Q/B values for multi-stanza Ecopath groups
  • cellstr2(s)
    CELLSTR2 Create cell array of strings from character array.
  • displayecopath(varargin)
    DISPLAYECOPATH Prints ecopath results to screen
  • ecopath2graph(Ewein)
    ECOPATH2GRAPH Create graph objects for Ecopath model
  • ecopathinputcheck(A, warn...
    ECOPATHINPUTCHECK Checks and fixes input in an Ewe input structure
  • ecopathinputinfo
    ECOPATHINPUTINFO Table of dimesions and units for ecopath input fields
  • ecopathlite(S, varargin)
    ECOPATHLITE Rewrite of Ecopath algorithms
  • ecopathmodel2rpath(EM, ou...
    ECOPATHMODEL2RPATH Print ecopathmodel data to comma-delimited files
  • editstanzacalcs(a, k, bab...
    EDITSTANZACALCS Replicate multi-stanza calculations from Ecopath
  • ewef2ecopathmodel(basenam...
    EWEF2ECOPATHMODEL Create ecopathmodel object from EwE-F input files
  • eweunitconvert(oldunit, n...
    EWEUNITCONVERT Convert Ewe input structure between units
  • mdb2ecopathmodel(file)
    MDB2ECOPATHMODEL Create ecopathmodel object from EwE6 data file
  • networkindices(T)
    NETWORKINDICES Calculate network indices for a food web
  • readtext(text, delimiter,...
  • regexpfound(str, expression)
    REGEXPFOUND Determine whether a regular expression is in a string
  • rpath2ecopathmodel(basena...
    RPATH2ECOPATHMODEL Create ecopathmodel object from Rpath data files
  • rpath2ewein(basename, var...
    RPATH2EWEIN Reads in Ecopath data from Rpath-formatted .csv files
  • sortewein(Ewein)
    SORTEWEIN Sort groups in Ewe input structure by trophic level
  • test_ProgressBar()
    test_ProgressBar ConsoleProgressBar Demo and Test
  • trophiclevel(dc, pp, nliv...
    TROPHICLEVEL Estimates trophic level of food web members
  • wraptext(str,width)
    wraptext formats long strings into wrapped text of specified width.
  • ConsoleProgressBar
  • ecopathmodel
    ECOPATHMODEL A Matlab-based version of the Ecopath food web model
  • View all files

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ecopath_matlab: A Matlab implementation of Ecopath

by

Kelly Kearney (view profile)

 

30 Jan 2013 (Updated )

Reproduces the main mass-balance algorithm from the popular ecosystem modeling tool, Ecopath

github_repo.zip
kakearney-ecopath_matlab-pkg-e066697/.gitignore
kakearney-ecopath_matlab-pkg-e066697/aggregate/.gitignore
kakearney-ecopath_matlab-pkg-e066697/aggregate/aggregate.m
kakearney-ecopath_matlab-pkg-e066697/cellstr2/.gitignore
kakearney-ecopath_matlab-pkg-e066697/cellstr2/cellstr2.m
kakearney-ecopath_matlab-pkg-e066697/ConsoleProgressBar/.gitignore
kakearney-ecopath_matlab-pkg-e066697/ConsoleProgressBar/ConsoleProgressBar.m
kakearney-ecopath_matlab-pkg-e066697/ConsoleProgressBar/license.txt
kakearney-ecopath_matlab-pkg-e066697/ConsoleProgressBar/test_ProgressBar.m
kakearney-ecopath_matlab-pkg-e066697/cprintf/.gitignore
kakearney-ecopath_matlab-pkg-e066697/cprintf/cprintf.m
kakearney-ecopath_matlab-pkg-e066697/cprintf/license.txt
kakearney-ecopath_matlab-pkg-e066697/ecopathmodel_overview.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/.gitignore
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/@ecopathmodel/ecopathmodel.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/ecopathmodel2rpath.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/editstanzacalcs.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/ewef2ecopathmodel.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/calcclusteredparams.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/calcstanza.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/displayecopath.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/ecopath2graph.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/ecopathinputcheck.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/ecopathinputinfo.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/ecopathlite.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/eweunitconvert.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/rpath2ewein.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/legacy/sortewein.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/mdb2ecopathmodel.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/networkindices.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/rpath2ecopathmodel.m
kakearney-ecopath_matlab-pkg-e066697/ecopath_matlab/trophiclevel.m
kakearney-ecopath_matlab-pkg-e066697/examples/.Rhistory
kakearney-ecopath_matlab-pkg-e066697/examples/Gen37/gen37_diet.csv
kakearney-ecopath_matlab-pkg-e066697/examples/Gen37/gen37_model.csv
kakearney-ecopath_matlab-pkg-e066697/examples/Generic_37.EwEmdb
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_diet.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_Flatfish1.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_Flatfish2.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_model.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_pedigree.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_Roundfish1.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_Roundfish2.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_stanzas.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPostStanza/REco_stanza_groups.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_diet.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_Flatfish1.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_Flatfish2.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_model.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_pedigree.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_Roundfish1.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_Roundfish2.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_stanzas.csv
kakearney-ecopath_matlab-pkg-e066697/examples/REcoPreStanza/REco_stanza_groups.csv
kakearney-ecopath_matlab-pkg-e066697/examples/rpath_example.R
kakearney-ecopath_matlab-pkg-e066697/examples/TampaBay/tb_diet.csv
kakearney-ecopath_matlab-pkg-e066697/examples/TampaBay/tb_model.csv
kakearney-ecopath_matlab-pkg-e066697/examples/TampaBay/tb_stanzas.csv
kakearney-ecopath_matlab-pkg-e066697/examples/TampaBay/tb_stanza_groups.csv
kakearney-ecopath_matlab-pkg-e066697/examples/Tampa_Bay.EwEmdb
kakearney-ecopath_matlab-pkg-e066697/fexinfo.txt
kakearney-ecopath_matlab-pkg-e066697/html/ecopathmodel_overview.html
kakearney-ecopath_matlab-pkg-e066697/html/ecopathmodel_overview.png
kakearney-ecopath_matlab-pkg-e066697/html/ecopathmodel_overview_01.png
kakearney-ecopath_matlab-pkg-e066697/html/ecopathmodel_overview_02.png
kakearney-ecopath_matlab-pkg-e066697/html/ecopathmodel_overview_03.png
kakearney-ecopath_matlab-pkg-e066697/html/ecopathmodel_overview_04.png
kakearney-ecopath_matlab-pkg-e066697/html/pedigree.png
kakearney-ecopath_matlab-pkg-e066697/legendflex/.gitignore
kakearney-ecopath_matlab-pkg-e066697/legendflex/legendflex.m
kakearney-ecopath_matlab-pkg-e066697/license.txt
kakearney-ecopath_matlab-pkg-e066697/matlabEcopathLogo.png
kakearney-ecopath_matlab-pkg-e066697/matlabEcopathLogo_white.png
kakearney-ecopath_matlab-pkg-e066697/paper.bib
kakearney-ecopath_matlab-pkg-e066697/paper.md
kakearney-ecopath_matlab-pkg-e066697/README.md
kakearney-ecopath_matlab-pkg-e066697/readtext/.gitignore
kakearney-ecopath_matlab-pkg-e066697/readtext/license.txt
kakearney-ecopath_matlab-pkg-e066697/readtext/readtext.m
kakearney-ecopath_matlab-pkg-e066697/regexpfound/.gitignore
kakearney-ecopath_matlab-pkg-e066697/regexpfound/regexpfound.m
kakearney-ecopath_matlab-pkg-e066697/setgetpos_V1.2/.gitignore
kakearney-ecopath_matlab-pkg-e066697/setgetpos_V1.2/getpos.m
kakearney-ecopath_matlab-pkg-e066697/setgetpos_V1.2/setgetposexamples.m
kakearney-ecopath_matlab-pkg-e066697/setgetpos_V1.2/setpos.m
kakearney-ecopath_matlab-pkg-e066697/wraptext/.gitignore
kakearney-ecopath_matlab-pkg-e066697/wraptext/html/wraptext_documentation.html
kakearney-ecopath_matlab-pkg-e066697/wraptext/license.txt
kakearney-ecopath_matlab-pkg-e066697/wraptext/wraptext.m
kakearney-ecopath_matlab-pkg-e066697/wraptext/wraptext_documentation.m

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