Code covered by the BSD License
 GetCircleCoordinates(n)Getting coordinates on a circle
 GetEllipseCoordinates(n,a,b)Getting coordinates on an ellipse
 GetEnzymeForOrganism(orga...
 GetRPData(A,K,MID,E,Q)Getting reaction pair data from KEGG
 GetRPData_Outer(organism)Getting reaction pairs from KEGG
 HDE(A)autoscaling
 KEGG_nameunfold(K)Getting all names for all compound ID from KEGG
 MetaboGetworksMain function for getting a custom database used in MetaboNetworks
 MetaboNetworksMain function for calculating, customizing and editing metabolic reaction networks
 MetaboNetworksGUI(varargin)Function for the GUI .fig file
 NameSelectUI(varargin)Used by the MetaboNetworks function if it cannot find exact matches for supplied labels
 OrganismFindGUI(varargin)Used by MetaboGetworks to select organisms to include
 SEL(A,varargin)SpringElectrical Embedding
 SPL_I(A,D,I)Finds out which additional compounds in A are needed to connect I with the shortest paths
 SPL_I2(A,D,I)Finds additional compounds in A are needed to connect I with the shortest paths
 SearchMetabolites(varargin)Can be used to search for metabolites in the database
 SelectMetaboliteNamesGUI(...Searches the workspace for possible metabolite name lists
 TextMatch(x,N,C,I)Finding matches of search terms in database
 UniformEdgeLength(A)Graph layout algorithm that aims to distribute nodes with equal distances
 UniformEdgeLengthEllipse(...Graph layout algorithm that aims to distribute nodes with equal distances, taking into account the length of the string
 bfs(A)Finds distances between all nodes using a breadth first search
 imin(x)Getting the index of the minimum
 lim(x)getting limits of data

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MetaboNetworks
by
Joram Posma
18 Jul 2013
(Updated
17 Mar 2015)
A toolbox to interactively create, customize and explore multisystemic metabolic reaction networks


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