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Graph-based segmentation of retinal layers in oct images

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Graph-based segmentation of retinal layers in oct images

by

ted p teng (view profile)

 

16 Sep 2013 (Updated )

Demonstration of graph-based segmentation of retinal layers in an optical coherence tomography image

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File Information
Description

This script demonstrates how graph theory can be used to segment retinal layers in optical coherence tomography images.
USAGE:
run the script by pressing F5.
I am working on a more comprehensive open source software package for computer-aided segmentation of retinal layers in optical coherence tomography images, which currently includes 1. automated segmentation of 6 reitnal layers and 2. GUI for examination and manual correction of the automated segmentation. It can be downloaded at my github page. http://pangyuteng.github.io/caserel
CITE AS:
Teng, Pang-yu. (2013). Caserel - An Open Source Software for Computer-aided Segmentation of Retinal Layers in Optical Coherence Tomography Images. Zenodo. 10.5281/zenodo.17893
http://dx.doi.org/10.5281/zenodo.17893

Required Products Bioinformatics Toolbox
Curve Fitting Toolbox
Image Processing Toolbox
MATLAB release MATLAB 8.0 (R2012b)
MATLAB Search Path
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Comments and Ratings (3)
28 Oct 2015 ted p teng

ted p teng (view profile)

@Bashir Isa Dodo, this code does not support opening of zip files, try unzipping the zip file and using the files within the zip file.

Comment only
26 Oct 2015 Bashir Isa Dodo

Hello, I tried running the code, by entering the folder path of the images, but I always get this error
>> updatedGTherorySimplified
Error using load
Unable to read file 'D:\Matlab TrialsCMF_v1.0.zip'. No such file or directory.

Error in updatedGTherorySimplified (line 35)
load([folderPath imageDir(1).name]);
and I am sure the images are in the directory, I tried copying the images to separate directory, and still no change
Hope to get a feedback thanks

Comment only
11 Jan 2015 KalviKumar J  
Updates
17 Sep 2013 1.1

+minor revision in the description section.
+added requirement: curve fitting toolbox.

23 May 2015 1.1

added citation

23 May 2015 1.1

edit grammer.

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