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Graph-based segmentation of retinal layers in oct images

version 1.1 (3.07 KB) by

Demonstration of graph-based segmentation of retinal layers in an optical coherence tomography image

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This script demonstrates how graph theory can be used to segment retinal layers in optical coherence tomography images.
USAGE:
run the script by pressing F5.
I am working on a more comprehensive open source software package for computer-aided segmentation of retinal layers in optical coherence tomography images, which currently includes 1. automated segmentation of 6 reitnal layers and 2. GUI for examination and manual correction of the automated segmentation. It can be downloaded at my github page. http://pangyuteng.github.io/caserel
CITE AS:
Chiu, Stephanie J., et al. "Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation." Optics express 18.18 (2010): 19413-19428.
Teng, Pang-yu. (2013). Caserel - An Open Source Software for Computer-aided Segmentation of Retinal Layers in Optical Coherence Tomography Images. Zenodo. 10.5281/zenodo.17893
http://dx.doi.org/10.5281/zenodo.17893

Comments and Ratings (4)

rong

rong (view profile)

ted p teng

ted p teng (view profile)

@Bashir Isa Dodo, this code does not support opening of zip files, try unzipping the zip file and using the files within the zip file.

Hello, I tried running the code, by entering the folder path of the images, but I always get this error
>> updatedGTherorySimplified
Error using load
Unable to read file 'D:\Matlab TrialsCMF_v1.0.zip'. No such file or directory.

Error in updatedGTherorySimplified (line 35)
load([folderPath imageDir(1).name]);
and I am sure the images are in the directory, I tried copying the images to separate directory, and still no change
Hope to get a feedback thanks

KalviKumar J

Updates

1.1

updated summary

1.1

edit grammer.

1.1

added citation

1.1

+minor revision in the description section.
+added requirement: curve fitting toolbox.

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