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Nuclei Counter

5.0 | 1 rating Rate this file 21 Downloads (last 30 days) File Size: 38.3 KB File ID: #45174 Version: 1.0
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Nuclei Counter


naive (view profile)


automatically count the number of nucleus in a microscope image

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This script accept an input nuclei image taken under microscope, then preprocess the image with tophat and bottomhat filter, enhance its contrast by multiplying gamma. Convert it to binary image with a histogram based threshold, count the number of connected components and detect edges of nucleus with LoG filter, then plot edges. Or calculate distance transform and detect seed points,use watershed algorithm for segmentation.

Required Products MATLAB
MATLAB release MATLAB 7.12 (R2011a)
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Comments and Ratings (1)
11 Nov 2014 Awais Nazir

Works good as described

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