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Canny edge detection in 2-D and 3-D

version 1.2 (18.2 KB) by

A Canny edge detector for two-dimensional image and three-dimensional volume data.

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This is an implementation of the Canny edge detector, extended to operate on 3-D as well as 2-D data. The function features:
* 3-D capability, using the natural extension of the standard 2-D algorithm.

* A sub-pixel location estimation option.

* Symmetric differences for gradient estimation, so edge positions do not suffer from a systematic bias, with the option to use nearest-neighbour differences.

* Anisotropic smoothing if required, for example for volumes where the resolution differs between axes.

* A flexible range of thresholding options, including simple defaults and precise distribution-based selection. Different images can be treated consistently using absolute thresholds.

* Options for fine-tuning non-maximum suppression.

* Efficient use of the separability of the Gaussian for filtering.

* Independent functions for the different stages of the processing pipeline. This simplifies development of new algorithms; some of the functions (e.g. smoothing) are also useful in other contexts.

All the functions in the submission should be downloaded and placed on the MATLAB path in order to use the CANNY function.

Comments and Ratings (45)

No matter how i call the function, I keep getting this error: The value of 'thresh' is invalid. Undefined function 'checkattributes' for input arguments of type 'cell'. Im running with matlab 2016b.

Nicke

Nicke (view profile)

Nicke

Nicke (view profile)

Tong Zhao

Hi David,
I just wonder how did you compute out the subpixel location of the edge, which paper or algorithm have you applied to your code? And I am a bit confused about the differences between the edge map and sub_pixel location matrix, because there are more edges in the sub_pixel matrix than that in the edge map. I am very appreciate if you could answer my question.

Kitt Sst

Dear David

I'm new to MatLab. please, let me know how to use this code with 3D point cloud (.ply file)

David Young

David Young (view profile)

Hi Yassine,

varargin is just a placeholder for a complex argument list. Details of the actual arguments, together with examples, are given in the help information for the function.

David Young

David Young (view profile)

Hi Yaser,

The mathematical background is given in Canny's original paper. There's a reference to this in the help information for the function. You could also consult almost any introductory textbook on machine vision or image analysis.

Hi David ,

i'm new to the matlab and i did not understand what should i put in the Parameter varargin of the canny function .

thank you

Nick Linton

Fantastic code with commenting that has taught me loads! Many thanks

Yaser Atani

Dear David,

Your code is very great, but I confused about some mathematical concepts in your code. I will be thankful if you offer me some references.

Matt Reyer

Hi David,

During non-maximum suppression when we interpolate along the gradient direction, why do you also change the coordinates in the non-gradient directions?

 I.e. when you add "coords" to "gcomps", you get a new point which is one pixel down the gradient direction, but you also move by some value less than a pixel in the other directions

Hi, can anyone help me? I need to find a method to build a 3D object from it's jpeg slices. do anyone know where i can find any tips or a guideline to do this?
Thank you

David Young

David Young (view profile)

Pan Lin: You can also solve the problem by editing the code - change addParameter to addParamValue everywhere it occurs.

Matt J

Matt J (view profile)

Pan Lin

No appropriate method, property, or field addParameter for class inputParser.

I have this problem too, and I found the reason is the version, I use 2013a, and only 2013b or later works

Eric Yeap

Li Dong

Hi David am new to matlab.pls let me know how to find threshold values.Also how to give threshold as input parameter.

slava c

Very good and fast implementation. A lot of options, and clear documentation.

Aslam

Aslam (view profile)

hey david i just fixed it and got the results thanks for the code again :)

David Young

David Young (view profile)

Hi Aslam, Sorry, but this isn't a good place to ask a question about imshow, which is not called by the functions in this FEX submission. Please could you put your question on Answers, and include your code which causes the error.

Aslam

Aslam (view profile)

hi David, i'm new to the matlab getting an error while runing this code in
Error in imshow (line 227)
  [common_args,specific_args] = ...

can you please tell where i'm i wrong ?

David Young

David Young (view profile)

Hi Nataliya, griddedInterpolant is only in R2011b and later. You'll need to update your MATLAB to use this function, I'm afraid.

Nataliya

Hi David, I am getting this error while running the code:
??? Undefined function or method 'griddedInterpolant' for input arguments of type 'single'.

Error in ==> nonmaxSuppress at 102
interpolant = griddedInterpolant(gMag, method);

Error in ==> canny at 230
[e, gMag] = nonmaxSuppress(g, 'Method', inp.Results.SMethod, ...

David Young

David Young (view profile)

Hi Murari, please see my response to Önder below.

Murari Mandal

Hi David, i am using matlab13a and getting this error-

No appropriate method, property, or field addParameter for class inputParser.

Error in canny (line 207)
inp.addParameter('Region', 'same');

Murari Mandal

Hi David, i am using matlab13a and getting this error-

No appropriate method, property, or field addParameter for class inputParser.

Error in canny (line 207)
inp.addParameter('Region', 'same');

David Young

David Young (view profile)

Hi Siddharth, It looks as if checkattributes is not on your path. Please make sure that you downloaded the complete submission and all the files are in a folder on your MATLAB path. It's best to download the zip file and unpack it rather than downloading individual functions.

Siddharth

Hi,

I got an error while using this program. Do you know what am i doing wrong?

Error using gsmoothn>checkinputs (line 128)
The value of 'Region' is invalid. Undefined function 'checkattributes' for input
arguments of type 'cell'.

Thanks

David Young

David Young (view profile)

Hi tong luo, This looks like a version problem also. Please try replacing this line in the definition of checkthresh:

  {'nonnan' 'real' 'finite' 'nonnegative' 'nondecreasing'}) && ...

with this:

  {}) && ...

This removes some checking, but that probably will not matter, and I hope will avoid the warning.

I am concerned, though, that the warning does not account for the result you observe. Please let me know if that continues to be a problem.

tong luo

Hi David,

I use matlab 2011b, and replace inp.addParameter, but when use your demo code for 2d pout.tif, the result image e is all 0 value, the reported warn is below, thank you in advance for the debug :

Warning: Failed to find attribute in list.
> In checkattributes at 11
  In canny>@(t)checkattributes(t,{'numeric'},{'nonnan','real','finite','nonnegative','nondecreasing'})&&(isempty(t)||isscalar(t)||isequal(size(t),[1,2])) at 202
  In canny at 232

David Young

David Young (view profile)

Hi Önder, I think the only change you need to make is to replace inp.addParameter with inp.addParamValue wherever it occurs. If there are other problems, please let me know what goes wrong.

Önder

Önder (view profile)

Hi David,

im a pretty new Matlab user.
Is there a possibilty to use this code with Matlab 7 R2010b ? Because I cant update to a higher version
best wishes

Daniel Leib

Thanks David - I didn't even realize Peter's existed on the system I was using. That explains the confusion!

Yours worked just fine in 3D after converting to double.

David Young

David Young (view profile)

Daniel: Looks like you are using Peter Kovesi's Canny function, not mine. Best check what is on your path. Incidentally, mine won't work with uint16 inputs - it only accepts double or single arrays.

Daniel Leib

Hi David,

Thanks for the reply. Here's the complete error that it's kicking out; the input array img is 1024x1024x421 of int16 type (no other options specified):

[gradientD1 orD1] = canny(img);

Undefined function 'conv2' for input arguments of type 'double' and attributes 'full 3d real'.

Error in derivative5 (line 92)
          varargout{n} = conv2(p, d1, im, 'same');

Error in canny (line 54)
    [Ix, Iy] = derivative5(im,'x','y'); % Get derivatives.

Error in HausdorffThicknessSratch (line 24)
[gradientD1 orD1] = canny(img);

David Young

David Young (view profile)

Daniel Leib: Please can you give details of the error, including the calling code and the full error message. The function is already designed to work on 3-D volumes, so it won't be as simple as swapping convn for conv2.

Daniel Leib

Hi David,

I gave your code a try on a 2D image and it worked wonderfully, but if I try to run it on a 3D grayscale volume representing CT data it fails using conv2. What alterations would be appropriate to swap those calls out for convn?

Thanks!

Christian

works well, thank you!
@nan: I'm using R2012b and it worked for me! thanks!

nan zhao

@David, for an old version of MATLAB, replace addParameter by addParamValue. Then it should work.

David Young

David Young (view profile)

David, your problem is most likely that you are using an old version of MATLAB. If you update to a recent version, you will find that inputParser is on your path. I prepared the submission using R2013b.

David

David (view profile)

I apologize I am new to Matlab. I get an error regarding the input parser.

inp.addParameter('Region','same')
No appropriate method, property, or field addParameter for class inputParser.

Any help would be greatly appreciated.

It is working perfectly

Mattias

Great work!

Updates

1.2

Sub-pixel estimation option; nearest-neighbour differencing option.

1.1

Simplified the code. Faster and more flexible nonmaximum suppression. Change to the ordering of elements of the vector of smoothing constants in the 2-D case, for greater consistency.

MATLAB Release
MATLAB 8.2 (R2013b)

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