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Mia 2.4

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Mia 2.4

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02 Apr 2004 (Updated )

Medical Image Analysis GUI.

orthogonalslicer(imaVOL, pixsize, colormaptype, minpix, maxpix)
function orthogonalslicer(imaVOL, pixsize, colormaptype, minpix, maxpix)
% ORTHOGONALSLICER
% 
% Orthogonalslicer creates 3 figures showing the 3 orthogonal slices 
% from a scalar volume of data. Cross lines on each image represents lines of 
% intersection of the appropriate plane and the two other orthogonal plane.
% By left dragging the mouse on any plane the user can explore the volume.
% Additional mouse options:
%   - the images can be zoomed and paned with middle and right mouse dragging
%   - to restore the original state (zoom and pan) double click on the image
%   
% Usage:
%
%   orthogonalslicer; or orthogonalslicer(1); 
%   DEMO using the MATLAB 'MRI' data set.  
%
%   orthogonalslicer(2); 
%   DEMO using the MATLAB 'FLOW' data set.  
%
%   orthogonalslicer(VOLUME) 
%       - VOLUME a 3D scalar data array
%
%   orthogonalslicer(VOLUME, PIXELSIZE) 
%       - PIXELSIZE describes the size(aspect) of the pixel in 3D /default = [1 1 1]/
%
%   orthogonalslicer(VOLUME, PIXELSIZE, COLORMAPTYPE) 
%       - COLORMAPTYPE selects the colormap to be used /default = jet/
%
%   orthogonalslicer(VOLUME, PIXELSIZE, COLORMAPTYPE,MINPIX,MAXPIX)) 
%       - MINPIX,MAXPIX normalizes the values in VOLUME to the range
%       specified (same as IMAGESC does)
%

%
% University of Debrecen, PET Center/LB 2004

if nargin == 0
    mridata = load('mri');
    imaVOL = squeeze(mridata.D);
    minpix = 0; maxpix = max(imaVOL(:));
    pixsize = [1 1 1/0.4];
    colormaptype = bone(256);
elseif nargin == 1
    if sum(size(imaVOL)) == 2
        if imaVOL == 1
            mridata = load('mri');
            imaVOL = squeeze(mridata.D);
            minpix = 0; maxpix = max(imaVOL(:));
            pixsize = [1 1 1/0.4];
            colormaptype = bone(256);
        elseif imaVOL == 2
            imaVOL = permute(flow(50),[1 3 2]);
            pixsize = [1 1 1];
            colormaptype = 'jet';
            minpix = min(imaVOL(:)); maxpix = max(imaVOL(:));
        end
        mia_Start3dCursor(imaVOL, pixsize, colormaptype, minpix, maxpix);  
        return;
    end
    pixsize = [1 1 1];
    colormaptype = jet;
    minpix = min(imaVOL(:)); maxpix = max(imaVOL(:));
elseif nargin == 2
    colormaptype = jet;
    minpix = min(imaVOL(:)); maxpix = max(imaVOL(:));
elseif nargin == 3
    minpix = min(imaVOL(:)); maxpix = max(imaVOL(:));
elseif nargin == 4
    maxpix = max(imaVOL(:));
end
    
mia_Start3dCursor(imaVOL, pixsize, colormaptype, minpix, maxpix);   
    
    
    

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