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Highlights from
Toolbox signal

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from Toolbox signal by Gabriel Peyre
Signal processing related functions.

perform_arithmetic_coding(x,dir,options)
function [y,nbr_bits] = perform_arithmetic_coding(x,dir,options)

% perform_arithmetic_coding - perform adaptive arithmetic coding
%
% 	[y,nbr_bits] = perform_arithmetic_coding(x, dir, options);
%
%   options.coder_type tells the type of arithmetic coder used :
%       coder_type=1: LetItWave Mex arithmetic coder.
%       coder_type=2: Escape-code based Mex arithmetic coder.
%       coder_type=3: Matlab slow arithmetic coder,
%           Based on the code of (c) Karl Skretting.
%       coder_type=4: Another slow arithmetic coder.
%       coder_type=5: *Not a real coder*, just using shannon bound to estimate.
%       coder_type=6: Matlab built-in fixed coder arithenco. You must provide the
%           probability distribution in options.histo.
%       coder_type=7: arithmetic coder using generalized laplacian
%           paremterized density estimation.
%       coder_type=8: Fast mex version of a fixed arithmetic coder (adapted
%           from Numerical Recipes). You must provide the
%           probability distribution in options.histo.
%
%   Set options.known_size=n if you know at decode time the length of the
%   signal.
%
%   Copyright (c) 2006 Gabriel Peyr


options.null = 0;
if isfield(options, 'coder_type')
    coder_type = options.coder_type;
else
    coder_type = 1;
end

if isfield(options, 'use_mex') && ~isfield(options, 'coder_type')
    use_mex = options.use_mex;
    if use_mex==1
        coder_type = 1;
    else
        coder_type = 3;
    end
end

if isfield(options, 'known_size')
    known_size = options.known_size;
else
    known_size = -1;
end

if isfield(options, 'known_bounds')
    known_bounds = options.known_bounds;
else
    known_bounds = [-1;-1];
end
known_bounds = [-1;-1]; % should not be used

if isempty(x)
    y = [];
    nbr_bits = 0;
    return;
end

% be sure we are dealing with vectors
x = double( x(:) );

if ~isempty(x) && dir==+1 && max(x)-min(x)>50*255
    error('For security, use a lower number of symbols.');
end
switch coder_type
    case 1
        % use Christophe's code
        y = perform_arithmetic_coding_mex(x,dir,known_size,known_bounds);
        if dir==1
            nbr_bits = (length(y)-1)*8;
            % add last fractional part
            nbr_bits = nbr_bits + ceil(log2(y(end)+1));
            if( y(end)==0 )
                nbr_bits = nbr_bits+1;  % special case
            end
        else
            nbr_bits = 0;
        end
    case 2
        % use Geoff's code
        y = perform_arithmetic_coding_escape(x,dir,known_size,known_bounds);
        if dir==1
            nbr_bits = (length(y)-1)*8;
            % add last fractional part
            nbr_bits = nbr_bits + ceil(log2(y(end)+1));
            if( y(end)==0 )
                nbr_bits = nbr_bits+1;  % special case
            end
        else
            nbr_bits = 0;
        end
    case 3
        [y,nbr_bits] = perform_arithmetic_coding_slow(x, dir);
    case 4
        % use erwann code
        if dir==1
            % first scale to 0...255
            a = min(x); b = max(x);
            if (b-a)>255
                error('Erwann''s code works only for byte data.');
            end
            x = x-a;
            % do coding
            y = aritcomp([a;x]')';
            nbr_bits = length(y)*8;
            nbr_bits = nbr_bits + ceil(log2(y(end)+1));
        else
            y = aritdec(x');
            y = y(:);
            a = y(1);
            y(1) = [];
            y = y+a;
            nbr_bits = 0;
        end
    case 5
        % Shannon bound
        y = x;
        nbr_bits = compute_entropy(x(:))*length(x(:));
    case 6
        % Matlab built-in coder
        if isfield(options, 'histo')
            histo = options.histo;
        else
            error('You must provide options.histo');
        end
        if length(x)<=1
            y = x; nbr_bits = 1; return;
        end
        % round to nearest integer up to precision 100000
        counts = max( round(histo*1e6), 1);
        if length(counts)<=1
            counts = [counts counts];
        end
        if ~isempty(x) && dir==1 && min(x)<1
            error('Minimum value for coding should be > 0.');
        end
        if dir==1
            y = arithenco(x, max(counts,1));
            nbr_bits = length(y);
            if dir==1 && known_size<0
                % code length
                n = length(x);
                [y,nb] = append_integer(y,n);
                nbr_bits = nbr_bits + nb;
            end
        else
            if known_size>0
                n = known_size;
            else
                [x,n] = append_integer(x);
            end 
            y = arithdeco(x, max(counts,1),n);
            nbr_bits = -1;
        end
    case 7
        nbr_bits = 0; y  = [];
        if isfield(options, 'laplacian_type')
            laplacian_type = options.laplacian_type;
        else
            warning('You should provide options.laplacian_type');
            laplacian_type = 'genlaplacian'; % ok for signed coding
        end
        % code length 
        if known_size<0
            if dir==1
                n = length(x);
                [y,nb] = append_integer(y,n);
                nbr_bits = nbr_bits + nb;
            else
                [x,n] = append_integer(x);
            end
        else
            n = known_size;
        end
        % compute a symmetric histogram
        if dir==1
            h = compute_histogram(x);
            if ~isempty(find(x<=0)) && laplacian_type(end)=='0'
                error( ['Laplacian coding using ' laplacian_type ' assume >0 values.'] );
            end
            % code m on 12 bits
            m = length(h);
            [y,nb] = append_integer(y,m);
            nbr_bits = nbr_bits + nb;
            if laplacian_type(end)~='0'
                x = x + (m+1)/2;
            end
        else
            [x,m] = append_integer(x);
        end
        if m>800
            % too big histograms, switch to traditional arithmetic coding
            if dir==1
                [st,nb] = perform_arithmetic_coding(x,+1);
                y = [y; st(:)];
                nbr_bits = nbr_bits + nb;
            else
                y = perform_arithmetic_coding(x,-1);
            end
            return;
        end
        % potential parameters
        spr = 2^7; sigma_min = 0.001; sigma_max = 0.1;
        apr = 2^3; alpha_min = 0.3; alpha_max = 1;
        opt.sigma = unique( [linspace(sigma_min,sigma_max,spr) linspace(sigma_max,5*sigma_max,spr/2)] );
        opt.alpha = unique( [linspace(alpha_min,alpha_max,apr) linspace(alpha_max,2*alpha_max,spr/2)] );
        apr = length(opt.alpha); spr = length(opt.sigma);
        if dir==1
            % fit a laplacian distribution
            [sigma,alpha,oor] = perform_laplacian_fitting( h, laplacian_type, opt );
            % code paramers
            [tmp,isigma] = min( abs(sigma-opt.sigma) );
            [tmp,ialpha] = min( abs(alpha-opt.alpha) );
            y = [y; isigma; ialpha]; 
            nbr_bits = nbr_bits + ceil( log2(spr) ) + ceil( log2(apr) );
        else
            % retrieve parameters
            isigma = x(1); x(1) = [];
            ialpha = x(1); x(1) = [];
        end
        sigma = opt.sigma(isigma); 
        alpha = opt.alpha(ialpha); 
        % distribution used for coding
        h1 = compute_laplacian_distribution( laplacian_type, m, sigma, alpha );
        % perform coding
        opt.coder_type = 6; % use builtin matlab coding
        opt.known_size = n;
        opt.histo = h1;
        [stream,nb]  = perform_arithmetic_coding(x, dir, opt);
        nbr_bits = nbr_bits + nb;
        y = [y; stream(:)];
        if dir==-1 && laplacian_type(end)~='0'
            y = y - (m+1)/2;
        end
    case 8
        % NR fast fixed coder
        if isfield(options, 'histo')
            histo = options.histo;
        else
            error('You must provide options.histo');
        end
        % round to nearest integer up to precision 100000
        counts = round(histo*1e6);
        if dir==1 && min(x)<1
            error('Minimum value for coding should be > 0.');
        end
        y = []; nbr_bits = 0;
        if dir==1
            n = length(x);
            if known_size<0
                [y,nbr_bits] = append_integer(y,n);
            elseif known_size~=n
                error('Provided size and real size does not match.');                
            end
            if length(x)==0 || length(counts)<max(x) || ~isempty(find(x<=0))
                error('Problem with coding.');
            end
        else
            if known_size>0
                n = known_size;
            else
                [x,n] = append_integer(x);
            end 
        end
        stream = perform_arithmetic_coding_fixed(x, dir, counts, n);
        y = [y; stream(:)];
        if dir==1
            nbr_bits = nbr_bits + 8*length(y);
        else
            nbr_bits = -1;
        end
    otherwise
        error('Unkwnown coder.');
end




%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%                   Erwann Code
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function C = aritdec(B)

% aritdec - Decompress a bitstream generated by aritcomp
% Usage
%   C = aritdec(B)
% Input
%
% B Bitstream
% Output
% C = Decompressed Chain (Array)
%
% For more information :
%  Arithmetic coding for data compression
%  I. Witten, R. Neal am\nd J. Cleary
%  Communication of the ACM, 1987
%  Volume 30 Number 6

%Definition of the constant (please check that it is consistent with the
% others programms

Code_rate_bits=16;
Top_value=2^16-1;
First_qtr=fix(Top_value/4+1);
Half=2*First_qtr;
Third_qtr=3*First_qtr;

Word_size=8;
Nb_of_chars=256;
EOF_symbol=Nb_of_chars+2;
Nb_of_symbols=Nb_of_chars+1;

Max_frequency=2^14-1;

%Start_Model
char_to_index=(2:(Nb_of_chars+1));
index_to_char=([0 1:Nb_of_chars 0]);

freq=ones(1,Nb_of_symbols+1);
cum_freq=Nb_of_symbols*freq-(0:Nb_of_symbols);
freq(1)=0;

C=[];
bits_to_go=0;
Bt=[];

B=[B 0 0];

value=0;

for i=1:Code_rate_bits
    [bit,B,Bt,bits_to_go]=input_bit(B,Bt,bits_to_go);
    value=2*value+bit;
end;

low=0;
high=Top_value;

while 1
    range=high-low+1;
    cum=((value-low+1)*cum_freq(1)-1)/range;

    symbol=2;
    while (cum_freq(1,symbol)>cum)
        symbol=symbol+1;
    end;

    high=low+range*cum_freq(symbol-1)/cum_freq(1)-1;
    low=low+range*cum_freq(symbol)/cum_freq(1);

    while 1
        if (high<Half)
        elseif (low>=Half)
            value=value-Half;
            low=low-Half;
            high=high-Half;
        elseif ((low>First_qtr)&(high<Third_qtr))
            value=value-First_qtr;
            low=low-First_qtr;
            high=high-First_qtr;
        else
            break;
        end;
        low=2*low;
        high=2*high;
        [bit,B,Bt,bits_to_go]=input_bit(B,Bt,bits_to_go);
        value=2*value+bit;
    end;

    if (symbol==EOF_symbol)
        break;
    end;
    ch=index_to_char(symbol);
    C=[C ch];


    %Update Model
    if (cum_freq(1)==Max_frequency)
        cum=0;
        for i=((Nb_of_symbols+1):-1:1)
            freq(i)=fix((freq(i)+1)/2);
            cum_freq(i)=cum;
            cum=cum+freq(i);
        end;
    end;
    i=symbol;
    while (freq(i)==freq(i-1))
        i=i-1;
    end;
    if (i<symbol)
        ch_i=index_to_char(i);
        ch_symbol=index_to_char(symbol);
        index_to_char([symbol i])=[ch_i ch_symbol];
        char_to_index([ch_i ch_symbol])=[symbol i];
    end;
    freq(i)=freq(i)+1;
    cum_freq(1:(i-1))=cum_freq(1:(i-1))+1;
end;

C=C-1;

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [bit,B,Bt,bits_to_go]=input_bit(B,Bt,bits_to_go)


Word_size=8;
if (bits_to_go== 0)
    Bt=[];
    b=B(1);
    for i=1:Word_size
        Bt=[ mod(b,2) Bt];
        b=(b-mod(b,2))/2;
    end;
    B=B(1,2:size(B,2));
    bits_to_go=Word_size;
end;
bit=Bt(Word_size+1-bits_to_go);
bits_to_go=bits_to_go-1;


function B = aritcomp(C)

% aritcomp - Compress a chain using arithmetic compression
% Usage
%   B = aritcomp(C)
% Input
% C = Chain to compress (Array of values)
% Output
% B =  compressed bitstream
% For more information :
%  Arithmetic coding for data compression
%  I. Witten, R. Neal am\nd J. Cleary
%  Communication of the ACM, 1987
%  Volume 30 Number 6

%Definition of the constant (please check that it is consistent with the
% others programms

C=C(:)';
C=C+1;
Code_rate_bits=16;
Top_value=2^16-1;
First_qtr=fix(Top_value/4+1);
Half=2*First_qtr;
Third_qtr=3*First_qtr;

Word_size=8;
Nb_of_chars=256;
% Nb_of_chars=512;
EOF_symbol=Nb_of_chars+2;
Nb_of_symbols=Nb_of_chars+1;

Max_frequency=2^14-1;

%Start_Model
char_to_index=(2:(Nb_of_chars+1));
index_to_char=([0 1:Nb_of_chars 0]);


freq=ones(1,Nb_of_symbols+1);
cum_freq=Nb_of_symbols*freq-(0:Nb_of_symbols);
freq(1)=0;

low=0;
high=Top_value;
bits_to_follow=0;

B=[];
Bt=[];


for i=1:size(C,2)
    symbol=char_to_index(C(1,i));
    range=high-low+1;
    high=(low+(range*cum_freq(symbol-1))/cum_freq(1)-1);
    low=(low+(range*cum_freq(symbol))/cum_freq(1));
    while 1
        if (high<Half)
            [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,0,bits_to_follow);
            low=2*low;
            high=2*high;
        elseif (low >= Half)
            [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,1,bits_to_follow);
            low=low-Half;
            high=high-Half;
            low=2*low;
            high=2*high;
        elseif ((low >=First_qtr)&(high < Third_qtr))
            bits_to_follow=bits_to_follow+1;
            low=low-First_qtr;
            high=high-First_qtr;
            low=2*low;
            high=2*high;
        else
            break;
        end;
    end;

    %Update Model

    if (cum_freq(1)==Max_frequency)
        cum=0;
        for i=((Nb_of_symbols+1):-1:1)
            freq(i)=fix((freq(i)+1)/2);
            cum_freq(i)=cum;
            cum=cum+freq(i);
        end;
    end;
    i=symbol;
    while (freq(i)==freq(i-1))
        i=i-1;
    end;
    if (i<symbol)
        ch_i=index_to_char(i);
        ch_symbol=index_to_char(symbol);
        index_to_char([symbol i])=[ch_i ch_symbol];
        char_to_index([ch_i ch_symbol])=[symbol i];
    end;
    freq(i)=freq(i)+1;
    cum_freq(1:(i-1))=cum_freq(1:(i-1))+1;
end;

symbol=EOF_symbol;

range=high-low+1;
high=low+(range*cum_freq(symbol-1))/cum_freq(1)-1;
low=low+(range*cum_freq(symbol))/cum_freq(1);
while 1
    if (high<Half)
        [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,0,bits_to_follow);
        low=2*low;
        high=2*high;
    elseif (low >= Half)
        [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,1,bits_to_follow);
        low=low-Half;
        high=high-Half;
        low=2*low;
        high=2*high;
    elseif ((low >=First_qtr)&(high < Third_qtr))
        bits_to_follow=bits_to_follow+1;
        low=low-First_qtr;
        high=high-First_qtr;
        low=2*low;
        high=2*high;
    else
        break;
    end;
end;

bits_to_follow=bits_to_follow+1;

if (low<First_qtr)
    [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,0,bits_to_follow);
else
    [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,1,bits_to_follow);
end;

Bt2=zeros(1,Word_size);
Bt2(1,1:size(Bt,2))=Bt;
Bt=Bt2;
Bt2=0;
for i=1:Word_size
    Bt2=2*Bt2+Bt(i);
end;
B=[B Bt2];


function [B,Bt,bits_to_follow]=bits_plus_follow(B,Bt,bit,bits_to_follow);

Word_size=8;

Bt=[Bt bit];
while (bits_to_follow>0)
    Bt=[Bt ~bit];
    bits_to_follow=bits_to_follow-1;
end;
while (size(Bt,2)>=Word_size);
    Bt2=0;
    for i=1:Word_size
        Bt2=2*Bt2+Bt(i);
    end;
    B=[B Bt2];
    Bt=Bt(1,(Word_size+1):size(Bt,2));
end;


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [y,nbr_bits] = perform_arithmetic_coding_slow(xC, dir)

% perform_arithmetic_coding_slow - perform adaptive arithmetic coding
%
% 	[y,nbr_bits] = perform_arithmetic_coding_slow(x, dir);
%
% Based on the code of (c) Karl Skretting
%
% ------------------------------------------------------------------
% Arguments:
%  y        a column vector of non-negative integers (bytes) representing
%           the code, 0 <= y(i) <= 255.
%  Res      a matrix that sum up the results, size is (NumOfX+1)x4
%           one line for each of the input sequences, the columns are
%           Res(:,1) - number of elements in the sequence
%           Res(:,2) - unused (=0)
%           Res(:,3) - bits needed to code the sequence
%           Res(:,4) - bit rate for the sequence, Res(:,3)/Res(:,1)
%           Then the last line is total (which include bits needed to store NumOfX)
%  x       a cell array of column vectors of integers representing the
%           symbol sequences. (should not be to large integers)
%           If only one sequence is to be coded, we must make the cell array
%           like: xC=cell(2,1); xC{1}=x; % where x is the sequence
% ------------------------------------------------------------------
% Note: this routine is extremely slow since it is all Matlab code

% SOME NOTES ON THE FUNCTION
% This function is almost like Arith06, but some important changes have
% been done. Arith06 is buildt almost like Huff06, but this close connection
% is removed in Arith07. This imply that to understand the way Arith06
% works you should read the dokumentation for Huff06 and especially the
% article on Recursive Huffman Coding. To understand how Arith07 works it is
% only confusing to read about the recursive Huffman coder, Huff06.
%
% Arith07 code each of the input sequences in xC in sequence, the
% method used for each sequence depends on what kind (xType) the
% sequence is. We have
%  xType  Explanation
%   0     Empty sequence (L=0)
%   1     Only one symbol (L=1) and x>1
%   9     Only one symbol (L=1) and x=0/1
%  11     Only one symbol (L=1) and x<0
%   2     all symbols are equal, L>1, x(1)=x(2)=...=x(L)>1
%   8     all symbols are equal, L>1, x(1)=x(2)=...=x(L)=0/1
%  10     all symbols are equal, L>1, x(1)=x(2)=...=x(L)<0
%   3     non-negative integers, 0<=x(l)<=1000
%   4     not to large integers, -1000<=x(l)<=1000
%   5     large non-negative integers possible, 0<=x(l)
%   6     also possible with large negative numbers
%   7     A binary sequence, x(l)=0/1.
% Many functions are defined in this m-file:
%  PutBit, GetBit     read and write bit from/to bitstream
%  PutABit, GetABit   Arithmetic encoding of a bit, P{0}=P{1}=0.5
%  PutVLIC, GetVLIC   Variable Length Integer Code
%  PutS(x,S,C), GetS(S,C)  A symbol x, which is in S, is aritmetic coded
%                     according to the counts given by C.
%                     Ex: A binary variable with the givene probabilities
%                     P{0}=0.8 and P{1}=0.2, PutS(x,[0,1],[4,1]).
%  PutN(x,N), GetN(N) Arithmetic coding of a number x in range 0<=x<=N where
%                     we assume equal probability, P{0}=P{1}=...=P{N}=1/(N+1)

if iscell(xC) & length(xC)>1
    nbr_bits = 0;
    for k=1:length(xC)
        [y{k},nb] = perform_arithmetic_coding(xC{k}, dir);
        nbr_bits = nbr_bits + nb;
    end
    return;
end


if dir==1
    xC = {xC};
end

%----------------------------------------------------------------------
% Copyright (c) 1999-2001.  Karl Skretting.  All rights reserved.
% Hogskolen in Stavanger (Stavanger University), Signal Processing Group
% Mail:  karl.skretting@tn.his.no   Homepage:  http://www.ux.his.no/~karlsk/
%
% HISTORY:
% Ver. 1.0  19.05.2001  KS: Function made (based on Arith06 and Huff06)
%----------------------------------------------------------------------

% these global variables are used to read from or write to the compressed sequence
global y Byte BitPos
% and these are used by the subfunctions for arithmetic coding
global high low range ub hc lc sc K code

Mfile='Arith07';
K=24;  % number of bits to use in integers  (4 <= K <= 24)
Display=0;      % display progress and/or results

% check input and output arguments, and assign values to arguments
if (nargin < 1);
    error([Mfile,': function must have input arguments, see help.']);
end
if (nargout < 1);
    error([Mfile,': function must have output arguments, see help.']);
end

if (~iscell(xC))
    Encode=0;Decode=1;
    y=xC(:);            % first argument is y
    y=[y;0;0;0;0];      % add some zeros to always have bits available
else
    Encode=1;Decode=0;
    NumOfX = length(xC);
end

Byte=0;BitPos=1;         % ready to read/write into first position
low=0;high=2^K-1;ub=0;   % initialize the coder
code=0;
% we just select some probabilities which we belive will work quite well
TypeS=[  3,  4,  5,  7,  6,  1,  9, 11,  2,  8, 10,  0];
TypeC=[100, 50, 50, 50, 20, 10, 10, 10,  4,  4,  2,  1];

if Encode
    Res=zeros(NumOfX,4);
    % initalize the global variables
    y=zeros(10,1);    % put some zeros into y initially
    % start encoding, first write VLIC to give number of sequences
    PutVLIC(NumOfX);
    % now encode each sequence continuously
    Ltot=0;
    for num=1:NumOfX
        x=xC{num};
        x=full(x(:));        % make sure x is a non-sparse column vector
        L=length(x);
        Ltot=Ltot+L;
        y=[y(1:Byte);zeros(50+2*L,1)];  % make more space available in y
        StartPos=Byte*8-BitPos+ub;      % used for counting bits
        % find what kind of sequenqe we have, save this in xType
        if (L==0)
            xType=0;
        elseif L==1
            if (x==0) | (x==1)       % and it is 0/1
                xType=9;
            elseif (x>1)             % and it is not 0/1 (and positive)
                xType=1;
            else                     % and it is not 0/1 (and negative)
                xType=11;
            end
        else
            % now find some more info about x
            maxx=max(x);
            minx=min(x);
            rangex=maxx-minx+1;
            if (rangex==1)                    % only one symbol
                if (maxx==0) | (maxx==1)       % and it is 0/1
                    xType=8;
                elseif (maxx>1)                % and it is not 0/1 (and positive)
                    xType=2;
                else                           % and it is not 0/1 (and negative)
                    xType=10;
                end
            elseif (minx == 0) & (maxx == 1)   % a binary sequence
                xType=7;
            elseif (minx >= 0) & (maxx <= 1000)
                xType=3;
            elseif (minx >= 0)
                xType=5;
            elseif (minx >= -1000) & (maxx <= 1000)
                xType=4;
            else
                xType=6;
            end
        end        % if (L==0)
        if Display >= 2
            disp([Mfile,': sequence ',int2str(num),' has xType=',int2str(xType)]);
        end
        %
        if sum(xType==[4,6])        % negative values are present
            I=find(x);               % non-zero entries in x
            Sg=(sign(x(I))+1)/2;     % the signs will be needed later, 0/1
            x=abs(x);
        end
        if sum(xType==[5,6])        % we take the logarithms of the values
            I=find(x);               % non-zero entries in x
            xa=x;                    % additional bits
            x(I)=floor(log2(x(I)));
            xa(I)=xa(I)-2.^x(I);
            x(I)=x(I)+1;
        end
        %  now do the coding of this sequence
        PutS(xType,TypeS,TypeC);
        if (xType==1)       % one symbol and x=x(1)>1
            PutVLIC(x-2);
        elseif (xType==2)   % L>1 but only one symbol, x(1)=x(2)=...=x(L)>1
            PutVLIC(L-2);
            PutVLIC(x(1)-2);
        elseif sum(xType==[3,4,5,6])  % now 'normalized' sequences: 0 <= x(i) <= 1000
            PutVLIC(L-2);
            M=max(x);
            PutN(M,1000);         % some bits for M
            % initialize model
            T=[ones(M+2,1);0];
            Tu=flipud((-1:(M+1))');   % (-1) since ESC never is used in Tu context
            % and code the symbols in the sequence x
            for l=1:L
                sc=T(1);
                m=x(l);
                hc=T(m+1);lc=T(m+2);
                if hc==lc      % unused symbol, code ESC symbol first
                    hc=T(M+2);lc=T(M+3);
                    EncodeSymbol;      % code escape with T table
                    sc=Tu(1);hc=Tu(m+1);lc=Tu(m+2);  % symbol with Tu table
                    Tu(1:(m+1))=Tu(1:(m+1))-1;       % update Tu table
                end
                EncodeSymbol;  % code actual symbol with T table (or Tu table)
                % update T table, MUST be identical in Encode and Decode
                % this avoid very large values  in T even if sequence is very long
                T(1:(m+1))=T(1:(m+1))+1;
                if (rem(l,5000)==0)
                    dT=T(1:(M+2))-T(2:(M+3));
                    dT=floor(dT*7/8+1/8);
                    for m=(M+2):(-1):1; T(m)=T(m+1)+dT(m); end;
                end
            end          % for l=1:L
            % this end the "elseif sum(xType==[3,4,5,6])"-clause
        elseif (xType==7)   % L>1 and   0 <= x(i) <= 1
            PutVLIC(L-2);
            EncodeBin(x,L);    % code this sequence a special way
        elseif (xType==8)   % L>1 and   0 <= x(1)=x(2)=...=x(L) <= 1
            PutVLIC(L-2);
            PutABit(x(1));
        elseif (xType==9)   % L=1 and   0 <= x(1) <= 1
            PutABit(x(1));
        elseif (xType==10)       % L>1 and  x(1)=x(2)=...=x(L) <= -1
            PutVLIC(L-2);
            PutVLIC(-1-x(1));
        elseif (xType==11)       % L=1 and   x(1) <= -1
            PutVLIC(-1-x);
        end         % if (xType==1)
        % additional information should be coded as well
        if 0         % first the way it is not done any more
            if sum(xType==[4,6])           % sign must be stored
                for i=1:length(Sg); PutABit(Sg(i)); end;
            end
            if sum(xType==[5,6])        % additional bits must be stored
                for i=1:L
                    for ii=(x(i)-1):(-1):1
                        PutABit(bitget(xa(i),ii));
                    end
                end
            end
        else         % this is how we do it
            if sum(xType==[4,6])           % sign must be stored
                EncodeBin(Sg,length(I));    % since length(I)=length(Sg)
            end
            if sum(xType==[5,6])        % additional bits must be stored
                b=zeros(sum(x)-length(I),1);  % number of additional bits
                bi=0;
                for i=1:L
                    for ii=(x(i)-1):(-1):1
                        bi=bi+1;
                        b(bi)=bitget(xa(i),ii);
                    end
                end
                if (bi~=(sum(x)-length(I)))
                    error([Mfile,': logical error, bi~=(sum(x)-length(I)).']);
                end
                EncodeBin(b,bi);    % since bi=(sum(x)-length(I))
            end
        end
        %
        EndPos=Byte*8-BitPos+ub;    % used for counting bits
        bits=EndPos-StartPos;
        Res(num,1)=L;
        Res(num,2)=0;
        Res(num,3)=bits;
        if L>0; Res(num,4)=bits/L; else Res(num,4)=bits; end;
        if Display
            disp([Mfile,': Sequence ',int2str(num),' of ',int2str(L),' symbols ',...
                'encoded using ',int2str(bits),' bits.']);
        end
    end         % for num=1:NumOfX
    % flush the arithmetic coder
    PutBit(bitget(low,K-1));
    ub=ub+1;
    while ub>0
        PutBit(~bitget(low,K-1));
        ub=ub-1;
    end
    % flush is finished
    y=y(1:Byte);
    varargout(1) = {y};
    if (nargout >= 2)
        % now calculate results for the total
        Res(NumOfX+1,1)=Ltot;
        Res(NumOfX+1,2)=0;
        Res(NumOfX+1,3)=Byte*8;
        if (Ltot>0); Res(NumOfX+1,4)=Byte*8/Ltot; else Res(NumOfX+1,4)=Byte*8; end;
        varargout(2) = {Res};
    end
end         % if Encode

if Decode
    for k=1:K
        code=code*2;
        code=code+GetBit;   % read bits into code
    end
    NumOfX=GetVLIC;   % first read number of sequences
    xC=cell(NumOfX,1);
    for num=1:NumOfX
        % find what kind of sequenqe we have, xType, stored first in sequence
        xType=GetS(TypeS,TypeC);
        % now decode the different kind of sequences, each the way it was stored
        if (xType==0)       % empty sequence, no more symbols coded
            x=[];
        elseif (xType==1)       % one symbol and x=x(1)>1
            x=GetVLIC+2;
        elseif (xType==2)   % L>1 but only one symbol, x(1)=x(2)=...=x(L)>1
            L=GetVLIC+2;
            x=ones(L,1)*(GetVLIC+2);
        elseif sum(xType==[3,4,5,6])  % now 'normalized' sequences: 0 <= x(i) <= 1000
            L=GetVLIC+2;
            x=zeros(L,1);
            M=GetN(1000);      % M is max(x)
            % initialize model
            T=[ones(M+2,1);0];
            Tu=flipud((-1:(M+1))');   % (-1) since ESC never is used in Tu context
            % and decode the symbols in the sequence x
            for l=1:L
                sc=T(1);
                range=high-low+1;
                counts=floor(( (code-low+1)*sc-1 )/range);
                m=2; while (T(m)>counts); m=m+1; end;
                hc=T(m-1);lc=T(m);m=m-2;
                RemoveSymbol;
                if (m>M)     % decoded ESC symbol, find symbol from Tu table
                    sc=Tu(1);range=high-low+1;
                    counts=floor(( (code-low+1)*sc-1 )/range);
                    m=2; while (Tu(m)>counts); m=m+1; end;
                    hc=Tu(m-1);lc=Tu(m);m=m-2;
                    RemoveSymbol;
                    Tu(1:(m+1))=Tu(1:(m+1))-1;   % update Tu table
                end
                x(l)=m;
                % update T table, MUST be identical in Encode and Decode
                % this avoid very large values  in T even if sequence is very long
                T(1:(m+1))=T(1:(m+1))+1;
                if (rem(l,5000)==0)
                    dT=T(1:(M+2))-T(2:(M+3));
                    dT=floor(dT*7/8+1/8);
                    for m=(M+2):(-1):1; T(m)=T(m+1)+dT(m); end;
                end
            end          % for l=1:L
            % this end the "elseif sum(xType==[3,4,5,6])"-clause
        elseif (xType==7)   % L>1 and   0 <= x(i) <= 1
            L=GetVLIC+2;
            x=DecodeBin(L);    % decode this sequence a special way
        elseif (xType==8)   % L>1 and   0 <= x(1)=x(2)=...=x(L) <= 1
            L=GetVLIC+2;
            x=ones(L,1)*GetABit;
        elseif (xType==9)   % L=1 and   0 <= x(1) <= 1
            x=GetABit;
        elseif (xType==10)       % L>1 and  x(1)=x(2)=...=x(L) <= -1
            L=GetVLIC+2;
            x=ones(L,1)*(-1-GetVLIC);
        elseif (xType==11)       % L=1 and   x(1) <= -1
            x=(-1-GetVLIC);
        end         % if (xType==0)
        % additional information should be decoded as well
        L=length(x);
        I=find(x);
        if 0
            if sum(xType==[4,6])           % sign must be retrieved
                Sg=zeros(size(I));
                for i=1:length(I); Sg(i)=GetABit; end;   % and the signs   (0/1)
                Sg=Sg*2-1;                               % (-1/1)
            end
            if sum(xType==[5,6])        % additional bits must be retrieved
                xa=zeros(L,1);
                for i=1:L
                    for ii=2:x(i)
                        xa(i)=2*xa(i)+GetABit;
                    end
                end
                x(I)=2.^(x(I)-1);
                x=x+xa;
            end
        else
            if sum(xType==[4,6])           % sign must be retrieved
                Sg=DecodeBin(length(I));    % since length(I)=length(Sg)
                Sg=Sg*2-1;                  % (-1/1)
            end
            if sum(xType==[5,6])        % additional bits must be retrieved
                bi=sum(x)-length(I);     % number of additional bits
                b=DecodeBin(bi);
                bi=0;
                xa=zeros(L,1);
                for i=1:L
                    for ii=2:x(i)
                        bi=bi+1;
                        xa(i)=2*xa(i)+b(bi);
                    end
                end
                x(I)=2.^(x(I)-1);
                x=x+xa;
            end
        end
        if sum(xType==[4,6])           % sign must be used
            x(I)=x(I).*Sg;
        end
        % now x is the retrieved sequence
        xC{num}=x;
    end         % for num=1:NumOfX
    varargout(1) = {xC};
end

if dir==1
    nbr_bits = Res(1,3);
else
    % undef for decoding
    nbr_bits = -1;
    y = xC{1};
end

return     % end of main function, Arith07
%----------------------------------------------------------------------
%----------------------------------------------------------------------

% --- The functions for binary sequences: EncodeBin and DecodeBin -------
% These function may call themselves recursively
function EncodeBin(x,L)
global y Byte BitPos
global high low range ub hc lc sc K code

Display=0;
x=x(:);
if (length(x)~=L); error('EncodeBin: length(x) not equal L.'); end;

% first we try some different coding methods to find out which one
% that might do best. Many more methods could have been tried, for
% example methods to check if x is a 'byte' sequence, or if the bits
% are grouped in other ways. The calling application is the best place
% to detect such dependencies, since it will (might) know the process and
% possible also its statistical (or deterministic) properties.
% Here we just check some few coding methods: direct, split, diff, diff+split
% The main variables used for the different methods are:
%  direct: x, I, J, L11, b0
%  split: x is split into x1 and x2, L1, L2, b1 is bits needed
%  diff: x3 is generated from x, I3, J3 L31, b2
%  diff+split: x3 is split into x4 and x5, L4, L5, b3
%
MetS=[0,1,2,3];       % the different methods, direct, split, diff, diff+split
MetC=[9,3,3,1];       % and the counts (which gives the probabilities)
% first set how many bits needed to code the method
b0=log2(sum(MetC))-log2(MetC(1));
b1=log2(sum(MetC))-log2(MetC(2));
b2=log2(sum(MetC))-log2(MetC(3));
b3=log2(sum(MetC))-log2(MetC(4));

I=find(x(1:(L-1))==1);      % except last element in x
J=find(x(1:(L-1))==0);
L11=length(I);
% perhaps is 'entropy' interesting
% N1=L11+x(L);
% N0=L-N1;
% b=N1*log2(L/N1)+N0*log2(L/N0);
% disp(['L=',int2str(L),',  N1=',int2str(N1),',  (e)bits=',num2str(b)]);
b0=b0+BitEst(L,L11+x(L));   % bits needed for the sequence without splitting
if Display
    disp(['EncodeBin: x of length ',int2str(L),' and ',int2str(L11+x(L)),...
        ' ones (p=',num2str((L11+x(L))/L,'%1.3f'),...
        ') can be coded by ',num2str(b0,'%6.0f'),' bits.']);
end
% diff with a binary sequence is to indicate wether or not a symbol is
% the same as preceeding symbol or not, x(0) is assumed to be '0' (zero).
% This is the DPCM coding scheme on a binary sequence
x3=abs(x-[0;x(1:(L-1))]);
I3=find(x3(1:(L-1))==1);      % except last element in x3
J3=find(x3(1:(L-1))==0);
L31=length(I3);
b2=b2+BitEst(L,L31+x3(L));  % bits needed for the sequence without splitting
if Display
    disp(['EncodeBin: diff x, L=',int2str(L),' gives ',int2str(L31+x3(L)),...
        ' ones (p=',num2str((L31+x3(L))/L,'%1.3f'),...
        ') can be coded by ',num2str(b2,'%6.0f'),' bits.']);
end
%
if (L>40)
    % only now we try to split the sequences x and x3
    if (L11>3) & ((L-L11)>3)
        % try to split x into x1 and x2, depending on previous symbol
        if L11<(L/2)
            x1=x(I+1);
            x2=[x(1);x(J+1)];
            L1=L11;L2=L-L11;
        else
            x1=[x(1);x(I+1)];
            x2=x(J+1);
            L1=L11+1;L2=L-L11-1;
        end
        b11=BitEst(L1,length(find(x1)));  % bits needed for x1
        b12=BitEst(L2,length(find(x2)));  % bits needed for x2
        % b1 is bits to code: Method, L11, x1 and x2
        b1=b1+log2(L)+b11+b12;
        if Display
            disp(['EncodeBin, x -> x1+x2:      lengths are ',int2str(L1),'+',int2str(L2),...
                '  bits are ',num2str(b11,'%6.0f'),'+',num2str(b12,'%6.0f'),...
                '.  Total is ',num2str(b1,'%6.0f'),' bits.']);
        end
    else
        b1=b0+1;      % just to make this larger
    end
    if (L31>3) & ((L-L31)>3)
        % try to split x3 into x4 and x5, depending on previous symbol
        if L31<(L/2)
            x4=x3(I3+1);
            x5=[x3(1);x3(J3+1)];
            L4=L31;L5=L-L31;
        else
            x4=[x3(1);x3(I3+1)];
            x5=x3(J3+1);
            L4=L31+1;L5=L-L31-1;
        end
        b31=BitEst(L4,length(find(x4)));  % bits needed for x4
        b32=BitEst(L5,length(find(x5)));  % bits needed for x5
        % b3 is bits to code: Method, L31, x4 and x5
        b3=b3+log2(L)+b31+b32;
        if Display
            disp(['EncodeBin, diff x -> x4+x5: lengths are ',int2str(L4),'+',int2str(L5),...
                '  bits are ',num2str(b31,'%6.0f'),'+',num2str(b32,'%6.0f'),...
                '.  Total is ',num2str(b3,'%6.0f'),' bits.']);
        end
    else
        b3=b2+1;      % just to make this larger
    end
else
    b1=b0+1;      % just to make this larger
    b3=b2+1;      % just to make this larger
end
% now code x by the best method of those investigated
[b,MetI]=min([b0,b1,b2,b3]);
MetI=MetI-1;
PutS(MetI,MetS,MetC);   % code which method to use
%
if MetI==0
    % code the sequence x
    N1=L11+x(L);
    N0=L-N1;
    PutN(N1,L);            % code N1, 0<=N1<=L
    for n=1:L
        if ~(N0*N1); break; end;
        PutS(x(n),[0,1],[N0,N1]);   % code x(n)
        N0=N0-1+x(n);N1=N1-x(n);    % update model (of rest of the sequence)
    end
elseif MetI==1
    % code x1 and x2
    clear x4 x5 x3 x I3 J3 I J
    PutN(L11,L-1);         % 0<=L11<=(L-1)
    EncodeBin(x1,L1);
    EncodeBin(x2,L2);
elseif MetI==2
    % code the sequence x3
    N1=L31+x3(L);
    N0=L-N1;
    PutN(N1,L);            % code N1, 0<=N1<=L
    for n=1:L
        if ~(N0*N1); break; end;
        PutS(x3(n),[0,1],[N0,N1]);   % code x3(n)
        N0=N0-1+x3(n);N1=N1-x3(n);    % update model (of rest of the sequence)
    end
elseif MetI==3
    % code x4 and x5
    clear x1 x2 x3 x I3 J3 I J
    PutN(L31,L-1);         % 0<=L31<=(L-1)
    EncodeBin(x4,L4);
    EncodeBin(x5,L5);
end
return    % end of EncodeBin

function x = DecodeBin(L)
global y Byte BitPos
global high low range ub hc lc sc K code

% these must be as in EncodeBin
MetS=[0,1,2,3];       % the different methods, direct, split, diff, diff+split
MetC=[9,3,3,1];       % and the counts (which gives the probabilities)
MetI=GetS(MetS,MetC);    % encode which method to use

if (MetI==1) | (MetI==3)   % a split was done
    L11=GetN(L-1);         % 0<=L11<=(L-1)
    if L11<(L/2)
        L1=L11;L2=L-L11;
    else
        L1=L11+1;L2=L-L11-1;
    end
    x1=DecodeBin(L1);
    x2=DecodeBin(L2);
    % build sequence x from x1 and x2
    x=zeros(L,1);
    if L11<(L/2)
        x(1)=x2(1);
        n1=0;n2=1;   % index for the last in x1 and x2
    else
        x(1)=x1(1);
        n1=1;n2=0;   % index for the last in x1 and x2
    end
    for n=2:L
        if (x(n-1))
            n1=n1+1;
            x(n)=x1(n1);
        else
            n2=n2+1;
            x(n)=x2(n2);
        end
    end
else                      % no split
    N1=GetN(L);
    N0=L-N1;
    x=zeros(L,1);
    for n=1:L
        if (N0==0); x(n:L)=1; break; end;
        if (N1==0); break; end;
        x(n)=GetS([0,1],[N0,N1]);   % decode x(n)
        N0=N0-1+x(n);N1=N1-x(n);    % update model (of rest of the sequence)
    end
end

if (MetI==2) | (MetI==3)   % x is diff coded
    for n=2:L
        x(n)=x(n-1)+x(n);
    end
    x=rem(x,2);
end

return    % end of DecodeBin


% ------- Other subroutines ------------------------------------------------

% Functions to write and read a Variable Length Integer Code word
% This is a way of coding non-negative integers that uses fewer
% bits for small integers than for large ones. The scheme is:
%   '00'   +  4 bit  - integers from 0 to 15
%   '01'   +  8 bit  - integers from 16 to 271
%   '10'   + 12 bit  - integers from 272 to 4367
%   '110'  + 16 bit  - integers from 4368 to 69903
%   '1110' + 20 bit  - integers from 69940 to 1118479
%   '1111' + 24 bit  - integers from 1118480 to 17895695
%   not supported  - integers >= 17895696 (=2^4+2^8+2^12+2^16+2^20+2^24)
function PutVLIC(N)
global y Byte BitPos
global high low range ub hc lc sc K code
if (N<0)
    error('Arith07-PutVLIC: Number is negative.');
elseif (N<16)
    PutABit(0);PutABit(0);
    for (i=4:-1:1); PutABit(bitget(N,i)); end;
elseif (N<272)
    PutABit(0);PutABit(1);
    N=N-16;
    for (i=8:-1:1); PutABit(bitget(N,i)); end;
elseif (N<4368)
    PutABit(1);PutABit(0);
    N=N-272;
    for (i=12:-1:1); PutABit(bitget(N,i)); end;
elseif (N<69940)
    PutABit(1);PutABit(1);PutABit(0);
    N=N-4368;
    for (i=16:-1:1); PutABit(bitget(N,i)); end;
elseif (N<1118480)
    PutABit(1);PutABit(1);PutABit(1);PutABit(0);
    N=N-69940;
    for (i=20:-1:1); PutABit(bitget(N,i)); end;
elseif (N<17895696)
    PutABit(1);PutABit(1);PutABit(1);PutABit(1);
    N=N-1118480;
    for (i=24:-1:1); PutABit(bitget(N,i)); end;
else
    error('Arith07-PutVLIC: Number is too large.');
end
return

function N=GetVLIC
global y Byte BitPos
global high low range ub hc lc sc K code
N=0;
if GetABit
    if GetABit
        if GetABit
            if GetABit
                for (i=1:24); N=N*2+GetABit; end;
                N=N+1118480;
            else
                for (i=1:20); N=N*2+GetABit; end;
                N=N+69940;
            end
        else
            for (i=1:16); N=N*2+GetABit; end;
            N=N+4368;
        end
    else
        for (i=1:12); N=N*2+GetABit; end;
        N=N+272;
    end
else
    if GetABit
        for (i=1:8); N=N*2+GetABit; end;
        N=N+16;
    else
        for (i=1:4); N=N*2+GetABit; end;
    end
end
return

% Aritmetic coding of a number or symbol x, the different symbols (numbers)
% are given in the array S, and the counts (which gives the probabilities)
% are given in C, an array of same length as S.
% x must be a number in S.
% example with symbols 0 and 1, where probabilites are P{0}=0.8, P{1}=0.2
% PutS(x,[0,1],[4,1]) and x=GetS([0,1],[4,1])
% An idea: perhaps the array S should be only in the calling function, and
% that it do not need to be passed as an argument at all.
% Hint: it may be best to to the most likely symbols (highest counts) in
% the beginning of the tables S and C.
function PutS(x,S,C)
global y Byte BitPos
global high low range ub hc lc sc K code
N=length(S);     % also length(C)
m=find(S==x);    % m is a single value, index in S, 1 <= m <= N
sc=sum(C);
lc=sc-sum(C(1:m));
hc=lc+C(m);
% disp(['PutS: lc=',int2str(lc),' hc=',int2str(hc),' sc=',int2str(sc),' m=',int2str(m)]);
EncodeSymbol;  % code the bit
return

function x=GetS(S,C)
global y Byte BitPos
global high low range ub hc lc sc K code
range=high-low+1;
sc=sum(C);
counts=floor(( (code-low+1)*sc-1 )/range);
m=1;
lc=sc-C(1);
while (lc>counts); m=m+1; lc=lc-C(m); end;
hc=lc+C(m);
x=S(m);
% disp(['GetS: lc=',int2str(lc),' hc=',int2str(hc),' sc=',int2str(sc),' m=',int2str(m)]);
RemoveSymbol;
return

% Aritmetic coding of a number x, 0<=x<=N, P{0}=P{1}=...=P{N}=1/(N+1)
function PutN(x,N)     % 0<=x<=N
global y Byte BitPos
global high low range ub hc lc sc K code
sc=N+1;
lc=x;
hc=x+1;
EncodeSymbol;  % code the bit
return

function x=GetN(N)
global y Byte BitPos
global high low range ub hc lc sc K code
range=high-low+1;
sc=N+1;
x=floor(( (code-low+1)*sc-1 )/range);
hc=x+1;lc=x;
RemoveSymbol;
return

% Aritmetic coding of a bit, probability is 0.5 for both 1 and 0
function PutABit(Bit)
global y Byte BitPos
global high low range ub hc lc sc K code
sc=2;
if Bit
    hc=1;lc=0;
else
    hc=2;lc=1;
end
EncodeSymbol;  % code the bit
return

function Bit=GetABit
global y Byte BitPos
global high low range ub hc lc sc K code
range=high-low+1;
sc=2;
counts=floor(( (code-low+1)*sc-1 )/range);
if (1>counts)
    Bit=1;hc=1;lc=0;
else
    Bit=0;hc=2;lc=1;
end
RemoveSymbol;
return;

% The EncodeSymbol function encode a symbol, (correspond to encode_symbol page 149)
function EncodeSymbol
global y Byte BitPos
global high low range ub hc lc sc K code
range=high-low+1;
high=low+floor(((range*hc)/sc)-1);
low=low+floor((range*lc)/sc);
while 1          % for loop on page 149
    if bitget(high,K)==bitget(low,K)
        PutBit(bitget(high,K));
        while ub > 0
            PutBit(~bitget(high,K));
            ub=ub-1;
        end
    elseif (bitget(low,K-1) & (~bitget(high,K-1)))
        ub=ub+1;
        low=bitset(low,K-1,0);
        high=bitset(high,K-1,1);
    else
        break
    end
    low=bitset(low*2,K+1,0);
    high=bitset(high*2+1,K+1,0);
end
return

% The RemoveSymbol function removes (and fill in new) bits from
% file, y, to code
function RemoveSymbol
global y Byte BitPos
global high low range ub hc lc sc K code
range=high-low+1;
high=low+floor(((range*hc)/sc)-1);
low=low+floor((range*lc)/sc);
while 1
    if bitget(high,K)==bitget(low,K)
        % do nothing (shift bits out)
    elseif (bitget(low,K-1) & (~bitget(high,K-1)))
        code=bitset(code,K-1,~bitget(code,K-1));     % switch bit K-1
        low=bitset(low,K-1,0);
        high=bitset(high,K-1,1);
    else
        break
    end
    low=bitset(low*2,K+1,0);
    high=bitset(high*2+1,K+1,0);
    code=bitset(code*2+GetBit,K+1,0);
end
if (low > high); error('low > high'); end;
return

% Functions to write and read a Bit
function PutBit(Bit)
global y Byte BitPos
BitPos=BitPos-1;
if (~BitPos); Byte=Byte+1; BitPos=8; end;
y(Byte) = bitset(y(Byte),BitPos,Bit);
return

function Bit=GetBit
global y Byte BitPos
BitPos=BitPos-1;
if (~BitPos); Byte=Byte+1; BitPos=8; end;
Bit=bitget(y(Byte),BitPos);
return

function b=BitEst(N,N1);
if (N1>(N/2)); N1=N-N1; end;
N0=N-N1;
if (N>1000)
    b=(N+3/2)*log2(N)-(N0+1/2)*log2(N0)-(N1+1/2)*log2(N1)-1.3256;
elseif (N1>20)
    b=(N+3/2)*log2(N)-(N0+1/2)*log2(N0)-(N1+1/2)*log2(N1)-0.020984*log2(log2(N))-1.25708;
else
    b=log2(N+1)+sum(log2(N-(0:(N1-1))))-sum(log2(N1-(0:(N1-1))));
end
return


function [stream,v] = append_integer(stream,n)

% append_integer - append an integer at the end of a coding stream
%
% Coding:
%   [stream,nbr_bits] = append_integer(stream,n);
% Decoding:
%   [stream,n] = append_integer(stream);
%
%   The integer is assumed to be positive.
%
%   Copyright (c) 2006 Gabriel Peyr

if nargin==1
    dir=-1;
elseif nargin==2
    dir=+1;
else
    error('Wrong number of arguments');
end

if dir==+1
    if n<0
        error('Code only positive integer.');
    end
    % code on 2 bits the range
    z = [];
    if n~=0
        while n>0
            z(end+1) = rem(n,256);
            n = fix(n/256);
        end
    else
        z = 0;
    end
    m = length(z);
    if m>4
        error('Code only 32 bits integers.');
    end
    stream = [stream(:); m; z(:)];
    v = 2 + 8*m; % number of bits
else
    m = stream(1); stream(1) = [];
    z = stream(1:m); stream(1:m) = [];
    v = 0;
    for i=1:m
        v = v + 256^(i-1) * z(i);
    end
end

function [stream,y] = append_stream(stream, st)

% append_stream - add a stream at the end of another one
%
% Coding:
%   [stream,nb_bits] = append_stream(stream, st)
% Decoding
%   [stream,st] = append_stream(stream)
%
%   nb_bits is the additional coding cost.
%
% Copyright (c) 2006 Gabriel Peyr



if nargin==1
    dir=-1;
elseif nargin==2
    dir=+1;
else
    error('Wrong number of arguments');
end

if dir==+1
    % write size
    [stream,nb_bits] = append_integer(stream, length(st));
    % write stream
    stream = [stream(:); st(:)];
    y = nb_bits;
else
    % retrieve size
    [stream,nb] = append_integer(stream);
    % read stream
    st = stream(1:nb); stream(1:nb) = [];
    y = st;
end

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