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Highlights from
Respiratory Rate Estimation

  • calculate_sqi.m
  • CtO.m
  • FMe.m
  • RS.m
  • calculate_sqi.m
  • CtA.m
  • CtO.m
  • FMe.m
  • RS.m
  • SPA.m
  • ACF(rel_data, wins, up)
    ACF calculates the autocorrelation function, and finds the RR.
  • ARM(rel_data, wins, up)
    ARM calculates the power spectral density of a signal using
  • ARP(rel_data, wins, up)
    ARP estimates the RR using auto-regressive all-pole modelling.
  • ARPz(rel_data, wins, up)
    ARPz estimates the RR using auto-regressive all-pole modelling, taking the
  • ARS(rel_data, wins, up)
    ARS calculates the power spectral density of a signal using
  • BFi(data, up)
    BFi extracts respiratory activity using a BPF
  • CCF(data, up)
    CCF extracts respiratory signal using the centered-correntropy function.
  • EHF(option, up)
    EHF eliminates very high frequencies from signals.
  • EHF(option, up)
    EHF eliminates very high frequencies from signals.
  • ELF(option, up)
    ELF eliminates very low frequencies from resampled respiratory
  • ELF(option, up)
    ELF eliminates very low frequencies from resampled respiratory
  • FPt(option, up)
    FPT detects Fiducial Points from PPG peak and trough annotations
  • FPt(option, up)
    FPT detects Fiducial Points from PPG peak and trough annotations
  • FTS(rel_data, wins, up)
    FTS calculates the frequency spectrum of a signal using the FFT, and finds
  • FTS(rel_data, wins, up)
    FTS calculates the frequency spectrum of a signal using the FFT, and finds
  • MIMICII_data_importer
    MIMICII_data_importer imports data from the MIMIC II database for use
  • MIMICII_data_importer
    MIMICII_data_importer imports data from the MIMIC II database for use
  • PDt(option, up)
    PDT detects PPG pulse peaks in PPG signals.
  • PDt(option, up)
    PDT detects PPG pulse peaks in PPG signals.
  • PKS(rel_data, wins, up)
    PKS estimates the RR using peak detection.
  • PMC(data, up)
    PMC fuses RR estimates using the pole magnitude criterion.
  • PRC(data, up)
    PRC fuses RR estimates using the pole ranking criterion.
  • PZX(rel_data, wins, up)
    PZX estimates the RR using a combination of zero-crossing detection, and
  • RDt(option, up)
    RDt detects QRS waves in ECG signals.
  • RDt(option, up)
    RDt detects QRS waves in ECG signals.
  • RRest(period)
    RRest runs RR algorithms on ECG and PPG signals using each possible
  • RRest(period)
    RRest runs RR algorithms on ECG and PPG signals using each possible
  • RRest_dataset_converter(d...
    RRest_dataset_converter converts a RRest data file from Matlab format into
  • RRest_synth_generator
    RRest_synth_generator generates synthetic ECG and PPG data under the
  • SFu(data, up)
    SFu fuses RR estimates using smart fusion, as described in PC's
  • SFu(data, up)
    SFu fuses RR estimates using an implementation of smart fusion.
  • TFu(data, up)
    TFu fuses RR estimates using temporal fusion.
  • WCH(rel_data, wins, up)
    WCH calculates the periodogram of a signal using Welch's periodogram, and
  • Wam(data, up)
    WAM extracts a respiratory signal corresponding to AM using the continuous
  • Wfm(data, up)
    WFM extracts a respiratory signal corresponding to FM using the continuous
  • ZeX(rel_data, wins, up)
    ZEX estimates the RR using zero-crossing detection.
  • adaptPulseSegment(y,Fs,an...
    ADAPTPULSESEGMENT perform adaptive pulse segmentation and artifact detection
  • adaptPulseSegment(y,Fs,an...
    ADAPTPULSESEGMENT perform adaptive pulse segmentation and artifact detection
  • bpf_signal_to_remove_non_...
    Filter pre-processed signal to remove freqs outside of the range of plausible resp freqs
  • bpf_signal_to_remove_non_...
    Filter pre-processed signal to remove freqs outside of the range of plausible resp freqs
  • calc_stats(up)
    CALC_STATS calculates statistics based on the estimated and ref RRs
  • calc_stats(up)
    CALC_STATS calculates statistics based on the estimated and ref RRs
  • check_exists(savepath, sa...
    Check_exists - checks to see if the specified field exists in the specified path
  • check_exists(savepath, sa...
    Check_exists - checks to see if the specified field exists in the specified path
  • co_ppg_peak_detector(ppg,...
    CO_PPG_PEAK_DETECTOR detects PPG pulse peaks
  • co_ppg_peak_detector(ppg,...
    CO_PPG_PEAK_DETECTOR detects PPG pulse peaks
  • create_table_of_algorithm...
    CREATE_TABLE_OF_ALGORITHMS creates a table of algorithms and their performances
  • create_table_of_algorithm...
    CREATE_TABLE_OF_ALGORITHMS creates a table of algorithms and their performances
  • downsample_data(data, up)
    DOWNSAMPLE_DATA extracts respiratory activity using a BPF (PC's implementation)
  • downsample_data(data, up)
    DOWNSAMPLE_DATA extracts respiratory activity using a BPF (PC's implementation)
  • ekg_filt(up)
    EKG_FILT extracts respiratory signals using various filtering techniques
  • elim_mains(s, fs, filt_ch...
    Filter signal to remove mains freqs
  • elim_mains(s, fs, filt_ch...
    Filter signal to remove mains freqs
  • elim_sub_cardiac(old_data...
    Filter pre-processed signal to remove frequencies below cardiac freqs
  • elim_sub_cardiac(old_data...
    Filter pre-processed signal to remove frequencies below cardiac freqs
  • elim_vhfs(s, fs, filt_cha...
    Filter signal to remove VHFs
  • elim_vhfs(s, fs, filt_cha...
    Filter signal to remove VHFs
  • elim_vlfs(old_data, up)
    Filter pre-processed signal to remove frequencies below resp
  • elim_vlfs(old_data, up)
    Filter pre-processed signal to remove frequencies below resp
  • estimate_ref_rr(up)
    ESTIMATE_REF_RR estimates a reference RR from impedance and paw signals
  • estimate_ref_rr(up)
    ESTIMATE_REF_RR estimates a reference RR from impedance and paw signals
  • estimate_rr(up)
    ESTIMATE_RR estimates RR from respiratory signals using each possible set
  • estimate_rr(up)
    ESTIMATE_RR estimates RR from respiratory signals using each possible set
  • extract_resp_sig(up)
    EXTRACT_RESP_SIG extracts respiratory signals from ECG and PPG signals using
  • extract_resp_sig(up)
    EXTRACT_RESP_SIG extracts respiratory signals from ECG and PPG signals using
  • find_rel_subjs(up)
    FIND_REL_SUBJS identifies the subjects for each group (YHVs, EHVs and
  • find_rel_subjs(up)
    FIND_REL_SUBJS identifies the subjects for each group (YHVs, EHVs and
  • find_spectral_peak(data, up)
    Store spectrum
  • find_spectral_peak(data, up)
    Store spectrum
  • fuse_rr(up)
    FUSE_RR fuses RRs estimated using a variety of techniques, as specified
  • fuse_rr(up)
    FUSE_RR fuses RRs estimated using a variety of techniques, as specified
  • identify_subj_wins( subj,...
    IDENTIFY_SUBJ_WINS Identifies windows in the respiratory signals on which
  • identify_subj_wins( subj,...
    IDENTIFY_SUBJ_WINS Identifies windows in the respiratory signals on which
  • lp_filter_signal_to_remov...
    Filter pre-processed signal to remove freqs above resp
  • lp_filter_signal_to_remov...
    Filter pre-processed signal to remove freqs above resp
  • ppg_filt(up)
    PPG_FILT extracts respiratory signals using various filtering techniques
  • rpeakdetect(data,samp_fre...
  • rpeakdetect(data,samp_fre...
  • setup_universal_params(pe...
    SETUP_UNIVERSAL_PARAMS sets the universal parameters for use throughout
  • setup_universal_params(pe...
    SETUP_UNIVERSAL_PARAMS sets the universal parameters for use throughout
  • specific_vortal_plots(up)
    Make plot of feature vs filter resp sigs
  • specific_vortal_plots(up)
    Make plot of feature vs filter resp sigs
  • specific_vortal_stats(up)
    Load BA data
  • specific_vortal_stats(up)
    Load BA data
  • tukey_win_data(d_s, up)
    TUKEY_WIN_DATA extracts respiratory activity using a BPF (PC's implementation)
  • iden_resp_sig_file_ending.m
    iden_resp_sig_file_ending - finds out what the appropriate file ending is for this resp sig file
  • save_or_append_data.m
    save_or_append_data - save data to either a new file or appended old file
  • iden_resp_sig_file_ending.m
    iden_resp_sig_file_ending - finds out what the appropriate file ending is for this resp sig file
  • save_or_append_data.m
    save_or_append_data - save data to either a new file or appended old file
  • View all files
5.0
5.0 | 1 rating Rate this file 43 Downloads (last 30 days) File Size: 1.12 MB File ID: #55289 Version: 2.0

Respiratory Rate Estimation

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07 Feb 2016 (Updated )

Algorithms for estimation of respiratory rate from the electrocardiogram and photoplethysmogram

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File Information
Description

For further details please see: http://peterhcharlton.github.io/RRest

MATLAB release MATLAB 8.5 (R2015a)
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Comments and Ratings (6)
14 Nov 2016 Peter H Charlton

We are currently preparing a manuscript which will accompany version 3 of the algorithms. Version 3 will be uploaded once this has been published.

Comment only
10 Nov 2016 Iosu Fernandez Lasheras

Hello. When will it be updated the V3 algorithm?

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10 May 2016 yao hong bing

25 Feb 2016 Rami Khushaba

Rami Khushaba (view profile)

Thanks for the update

Comment only
23 Feb 2016 Peter H Charlton

My apologies, this has been created in preparation for an upcoming paper publication. I intend to upload the files within the next few weeks.

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18 Feb 2016 Rami Khushaba

Rami Khushaba (view profile)

empty submission? please double check.
The download size is 2KB only. If you are waiting for your paper publication then please say something.

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Updates
17 Mar 2017 2.0

Now contains v.1.0 and v.2.0.

For further details on the different versions please see: https://github.com/peterhcharlton/RRest/wiki/Toolbox-Versions

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