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iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii

version 2.0 (2.11 MB) by

Coding Sequence optimization for Chlamydomonas reinhardtii

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Updated

This program provides an implementation for carrying out the sequence optimization pipeline we recommend in:
Weiner I*, Atar S*, Schweitzer S*, Eilenberg H, Feldman Y, Avitan M, Danon A, Tuller T^, Yacoby I^
Enhancing Synthetic Expression in C. reinhardtii by Transcript Sequence Optimization
The Plant Journal, 2018
We provide 2 options for running our optimization pipe-line:
1. Install the program on your machine using the .exe file (which is located in the directory relevant to your machine) and run the optimization using a GUI
2. Use our original code to run the optimization from your own MATLAB command line

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Updates

2.0

Find both source code and a GUI to run it in the linked Github repository

2.0

I added an .exe file for installing a GUI that conveniently runs our optimization algorithm "behind the scenes" and returns the optimized sequence.
This file is located in the linked Github repository.

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