iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii

Version 2.0.0.0 (3.4 MB) by Iddo Weiner
Coding Sequence optimization for Chlamydomonas reinhardtii
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89 Downloads
Updated 30 Mar 2018
View License on GitHub

This program provides an implementation for carrying out the sequence optimization described in:
'Enhancing Heterologous Expression in C. reinhardtii by Transcript Sequence Optimization'
Weiner et al., The Plant Journal, 2018
This is a standalone application for optimizing DNA sequences meant for achieving high expression in Chlamydomonas reinhardtii (the MATLAB source code is available too).
The fascinating Chlamydomonas picture used as this app's logo was taken by Gerd Guenther:
(https://www.allposters.com/-st/Gerd-Guenther-Posters_c180530_.htm)

Cite As

Iddo Weiner (2024). iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii (https://github.com/iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2015a
Compatible with any release
Platform Compatibility
Windows macOS Linux
Categories
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Version Published Release Notes
2.0.0.0

We improved the GUI
I added an .exe file for installing a GUI that conveniently runs our optimization algorithm "behind the scenes" and returns the optimized sequence.
This file is located in the linked Github repository.
highlighted the availability of the source code
Find both source code and a GUI to run it in the linked Github repository
We also added the MATLAB source code for the convenience of MATLAB users
1.0.0.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.