Sliceomatic

Volume slice visualization gui

Description

GUI for manipulating slices and isosurfaces over a volume.
Control over color transparency, contours, and rendering techniques via menus.

Original sliceomatic 1.0 for older versions of MATLAB is in the zip file.

• Acknowledgements: This submission has inspired the following:; MRI Brain Segmentation
• MATLAB release: MATLAB 7.0.1 (R14SP1)
• Other requirements: A good OpenGL hardware card is quite useful.

Other Files

license.txt,
sliceomatic/blinnblob.m,
sliceomatic/private/activelabel.m,
sliceomatic/private/figmenus.m,
sliceomatic/private/figtoolbar.m,
sliceomatic/private/getarrowslice.m,
sliceomatic/private/isocontrols.m,
sliceomatic/private/popset.m,
sliceomatic/private/propcheck.m,
sliceomatic/private/pushset.m,
sliceomatic/private/selectcontourlevels.m,
sliceomatic/private/setpointer.m,
sliceomatic/private/setvolumerange.m,
sliceomatic/private/showarrowtip.m,
sliceomatic/private/slicecontrols.m,
sliceomatic/private/sliceomaticfigure.m,
sliceomatic/private/sliceomaticmotion.m,
sliceomatic/private/sliceomaticsetdata.m,
sliceomatic/private/slowset.m,
sliceomatic/slicebucky.m,
sliceomatic/sliceomatic-1.0/sliceomatic1p0.m,
sliceomatic/sliceomatic.m

[Peter Volegov]

 

[James Halmer]

I dont understand it

[Evan Westwood]

Excellent way to look at 3-D data and a great template for learning about how to image 3-D data in Matlab. Note that right-clicking on arrows or surfaces to get the contextmenu options only works if you have nothing checked in the uppermost section of the figure's Tools menu.

 

[G]

excellent, especially due to lack of alternatives.

[Chris]

A VERY nice tool for quickly surveying a 3-d dataset.
I found the interface intuitive as well. One question though...Am I missing a way to remove slices from the display once they are created?

 

[Peter Kraal]

very nice tool! very handy for soil profiles I must say. too bad axis dimensions are hard to edit. tip: for good isosurfaces, replace all 'unwanted' values with the same value.

[maurizio fedi]

Fantastic tool to manage 3D data.
only a problem: why one cannot use actual coordinates?

[Dhaval Shah]

very good tool.

[Adam van Eekeren]

Nice tool to look at 3D-data!
Only one concern: it is possible to place a slice controller outside a slice...by doing that, it is not possible to remove it anymore!

[Gordon Cooper]

This is excellent ! We have incorporated it into our geophysics teaching.

[Marco Cannella]

Fantastic. You can analize 3D data in a fast and simple way.

[Jimmy Pagel]

Great code!
just one request: can you please add a way
to remove a slice as well.

[Andreas Loesch]

Great :)
one wish: show the gradient in the field (quiverplot or something like that)

@Jimmy -> the right mouse button on the Arrow is your frient

[Torbjørn Hergum]

A great tool - for as long as it works. It frequently crashes matlab with a "segmentation fault". I'm running matlab on Linux RedHat 9.

[Binevia karoly]

great but all the time crashes, that's unbeliveble, the author should try harder...

[Krishnakumar Venkateswaran]

This is a great tool. Excellent tool for people like me who work on confocal imaging. Works for me without any problem.

[senthil kumar]

IT IS VERY USFULL FOR ALL SIMULATION PURPOSE

[Shira Rubin]

This is a fantastic tool!
But - how is it possible to use the actual coordinates of the data? This would really make it perfect.

[Fu-Sung Wang]

I'm impressed by this great demonstration.

[Jesper Pedersen]

Nice GUI and program. However, it is very, very annoying that one cannot use the actual coordinates of the data.

[Jesper Pedersen]

I have to re-rate this piece of software. It is fantastic, and in a newer version it is in fact possible to use the actual coordinates of the data.

[Vinay D]

Very handy

[Larry Velasco]

Thanks to the Sliceomatic people.. This software is great, it has helped me a lot for my PHD, where I have been working with FEM aand FDTD ... I now can visualise all my 3D data in a very good way..

Thanks a lot,

[Mirza Kamaludeen]

This is an excellent tool, which can be used to compare results obtained from sterelogy

[Ibon Bustinduy]

An improved version is available here:
http://gtts.ehu.es:8080/Ibon/ISIS/sliceomatic_ibon.zip

Works fine in Matlab 7.1 (In both Windows and Unix OS).

Once downloaded just type
doc sliceomatic to obtain more information.

Thanks A LOT. Eric Ludlam

[Nick Clark]

This is awsome! Helping me no end with FTDT acoustic simulation

[Nick Clark]

FDTD sorry - long day :)

[Matt Crema]

Really great interactive tool for quick exploration of volume data.

Thanks.

[Vinay D]

very useful

[Daniel Simões-Lopes]

Althogth it's not bug-free, suits me well!
A very nice GUI application for volume visualization.

[Dinesh Appya]

useful tool for volume data

[Yashavantha BS]

very useful tool..

[John Franklin]

Fantastic work! This is pretty slick. I was going to complain about the interface taking up too much room, but then I noticed the option to remove interface visibility and the ability to copy to a "clean" figure. Really nice.

[vinay pai]

 

[andi setiawan]

very good

[Ruwan Ranaweera]

great work!

[Liu Xuefeng]

excellent

[Chau Tran Kim]

Wonderful

[Jim Haras]

i have a series of mri silces, dicom files , and i want to import them. is this possible? if so, a little how-to guide would certainly be appreciated.

[neftirini isabel]

can someone help me, with how do i call it on matlab...i am a new user, and i didnt manage to add it to the toolbox...

[ucd puri]

seems nie, i will try to ue it

[poornima]

i have some dicom images. can anyone tell me how can i view these dicom images?

[Edgar Guevara Codina]

Really nice job!

[Harinee A.S]

can anyone tell me how this works.. can we import images in this..

[Jacob Kirkensgaard]

I have a problem with sliceomatic on OSX 10.6.2, matlab v. 7.10.0 (R2010a). When I start up the program I am in cursor mode and am able to control the slice buttons etc., but if I go to rotate-mode I can't get back to cursor-mode - the little arrow is simply missing from the annotation toolbar... Or am I missing something?