% Primarily taken from LSM Toolbox, a plugin for ImageJ
% Peter Li 12-Apr-07
% Some rights reserved. Licensed under Creative Commons: http://creativecommons.org/licenses/by-nc-sa/3.0/
CONTENTS_LSM_H = {
'LSMINF' ;...
'LSMINF_2' ;...
'SCANINFO_HEXTAGMAP' ;...
'SAMPLINGMODE_MAP' ;...
'CHANNELCOLORS' ;...
'TIMESTAMPS' ;...
'CONTENTS_LSM_H' ;...
};
TIFF_H;
CONTENTS_LSM_H = [CONTENTS_LSM_H;CONTENTS_TIFF_H];
LSMINF = struct( ...
'unknown1' , '8*uchar' ,...
'DIMENSIONS' , '3*uint32' ,...
'NUMBER_OF_CHANNELS' , 'uint32' ,...
'TIMESTACKSIZE' , 'uint32' ,...
'DATATYPE' , 'uint32' ,...
'unknown2' , '8*uchar' ,...
'VOXELSIZES' , '3*float64' ,...
'unknown3' , '24*uchar' ,...
'SCANTYPE' , 'uint16' ,...
'SPECTRALSCAN' , 'uint16' ,...
'DATATYPE2' , 'uint32' ,...
'unknown4' , 'uint32' ,...
'OFFSET_INPUTLUT' , 'uint32' ,...
'OFFSET_OUTPUTLUT' , 'uint32' ,...
'OFFSET_CHANNELSCOLORS' , 'uint32' ,...
'unknown5' , '8*uchar' ,...
'OFFSET_CHANNELDATATYPES' , 'uint32' ,...
'OFFSET_SCANINFO' , 'uint32' ,...
'unknown6' , 'uint32' ,...
'OFFSET_TIMESTAMPS' , 'uint32' ,...
'unknown7' , '68*uchar' ,...
'OFFSET_CHANNELWAVELENGTH' , 'uint32' ...
);
LSMINF_2 = struct( ...
'MagicNumber' , 'uint32' ,...
'StructureSize' , 'uint32' ,...
'DimensionX' , 'uint32' ,...
'DimensionY' , 'uint32' ,...
'DimensionZ' , 'uint32' ,...
'DimensionChannels' , 'uint32' ,...
'DimensionTime' , 'uint32' ,...
'IntensityDataType' , 'uint32' ,...
'ThumbnailX' , 'uint32' ,...
'ThumbnailY' , 'uint32' ,...
'VoxelSizeX' , 'float64' ,...
'VoxelSizeY' , 'float64' ,...
'VoxelSizeZ' , 'float64' ,...
'OriginX' , 'float64' ,...
'OriginY' , 'float64' ,...
'OriginZ' , 'float64' ,...
'ScanType' , 'uint16' ,...
'SpectralScan' , 'uint16' ,...
'DataType' , 'uint32' ,...
'OffsetVectorOverlay' , 'uint32' ,...
'OffsetInputLut' , 'uint32' ,...
'OffsetOutputLut' , 'uint32' ,...
'OffsetChannelColors' , 'uint32' ,...
'TimeInterval' , 'float64' ,...
'OffsetChannelDataTypes' , 'uint32' ,...
'OffsetScanInformation' , 'uint32' ,...
'OffsetKsData' , 'uint32' ,...
'OffsetTimeStamps' , 'uint32' ,...
'OffsetEventList' , 'uint32' ,...
'OffsetRoi' , 'uint32' ,...
'OffsetBleachRoi' , 'uint32' ,...
'OffsetNextRecording' , 'uint32' ,...
'DisplayAspectX' , 'float64' ,...
'DisplayAspectY' , 'float64' ,...
'DisplayAspectZ' , 'float64' ,...
'DisplayAspectTime' , 'float64' ,...
'OffsetMeanOfRoisOverlay' , 'uint32' ,...
'OffsetTopoIsolineOverlay' , 'uint32' ,...
'OffsetTopoProfileOverlay' , 'uint32' ,...
'OffsetLinescanOverlay' , 'uint32' ,...
'ToolbarFlags' , 'uint32' ,...
'OffsetChannelWavelenth' , 'uint32' ,...
'OffsetChannelFactors' , 'uint32' ,...
'ObjectiveSphereCorrection' , 'float64' ,...
'OffsetUnmixParameters' , 'uint32' ...
);
SCANINFO_HEXTAGMAP = struct( ...
'h10000000' , 'RECORDINGS' ,...
'h10000001' , 'ENTRY_NAME' ,...
'h10000002' , 'ENTRY_DESCRIPTION' ,...
'h10000003' , 'ENTRY_NOTES' ,...
'h10000004' , 'ENTRY_OBJECTIVE' ,...
'h10000005' , 'PROCESSING_SUMMARY' ,...
'h10000006' , 'SPECIAL_SCAN' ,...
'h10000007' , 'SCAN_TYPE' ,...
'h10000008' , 'SCAN_MODE' ,...
'h10000009' , 'STACKS_COUNT' ,...
'h1000000A' , 'LINES_PER_PLANE' ,...
'h1000000B' , 'SAMPLES_PER_LINE' ,...
'h1000000C' , 'PLANES_PER_VOLUME' ,...
'h1000000D' , 'IMAGES_WIDTH' ,...
'h1000000E' , 'IMAGES_HEIGHT' ,...
'h1000000F' , 'NUMBER_OF_PLANES' ,...
'h10000010' , 'IMAGES_NUMBER_STACKS' ,...
'h10000011' , 'IMAGES_NUMBER_CHANNELS' ,...
'h10000012' , 'LINESCAN_XY' ,...
'h10000013' , 'SCAN_DIRECTION' ,...
'h10000014' , 'TIME_SERIES' ,...
'h10000015' , 'ORIGNAL_SCAN_DATA' ,...
'h10000016' , 'ZOOM_X' ,...
'h10000017' , 'ZOOM_Y' ,...
'h10000018' , 'ZOOM_Z' ,...
'h10000019' , 'SAMPLE_0X' ,...
'h1000001A' , 'SAMPLE_0Y' ,...
'h1000001B' , 'SAMPLE_0Z' ,...
'h1000001C' , 'SAMPLE_SPACING' ,...
'h1000001D' , 'LINE_SPACING' ,...
'h1000001E' , 'PLANE_SPACING' ,...
'h1000001F' , 'PLANE_WIDTH' ,...
'h10000020' , 'PLANE_HEIGHT' ,...
'h10000021' , 'VOLUME_DEPTH' ,...
'h10000034' , 'ROTATION' ,...
'h10000035' , 'PRECESSION' ,...
'h10000036' , 'SAMPLE_0TIME' ,...
'h10000037' , 'START_SCAN_TRIGGER_IN' ,...
'h10000038' , 'START_SCAN_TRIGGER_OUT' ,...
'h10000039' , 'START_SCAN_EVENT' ,...
'h10000040' , 'START_SCAN_TIME' ,...
'h10000041' , 'STOP_SCAN_TRIGGER_IN' ,...
'h10000042' , 'STOP_SCAN_TRIGGER_OUT' ,...
'h10000043' , 'STOP_SCAN_EVENT' ,...
'h10000044' , 'START_SCAN_TIME2' ,...
'h10000045' , 'USE_ROIS' ,...
'h10000046' , 'USE_REDUCED_MEMORY_ROIS' ,...
'h10000047' , 'USER' ,...
'h10000048' , 'USE_BCCORECCTION' ,...
'h10000049' , 'POSITION_BCCORRECTION1' ,...
'h10000050' , 'POSITION_BCCORRECTION2' ,...
'h10000051' , 'INTERPOLATIONY' ,...
'h10000052' , 'CAMERA_BINNING' ,...
'h10000053' , 'CAMERA_SUPERSAMPLING' ,...
'h10000054' , 'CAMERA_FRAME_WIDTH' ,...
'h10000055' , 'CAMERA_FRAME_HEIGHT' ,...
'h10000056' , 'CAMERA_OFFSETX' ,...
'h10000057' , 'CAMERA_OFFSETY' ,...
'h11000000' , 'TIMERS' ,...
'h12000000' , 'TIMER' ,...
'h12000001' , 'TIMER_NAME' ,...
'h12000003' , 'INTERVAL' ,...
'h12000004' , 'TRIGGER_IN' ,...
'h12000005' , 'TRIGGER_OUT' ,...
'h13000000' , 'MARKERS' ,...
'h14000000' , 'MARKER' ,...
'h14000001' , 'MARKER_NAME' ,...
'h14000002' , 'DESCRIPTION' ,...
'h14000003' , 'TRIGGER_IN' ,...
'h14000004' , 'TRIGGER_OUT' ,...
'h20000000' , 'TRACKS' ,...
'h30000000' , 'LASERS' ,...
'h40000000' , 'TRACK' ,...
'h40000001' , 'MULTIPLEX_TYPE' ,...
'h40000002' , 'MULTIPLEX_ORDER' ,...
'h40000003' , 'SAMPLING_MODE' ,...
'h40000004' , 'SAMPLING_METHOD' ,...
'h40000005' , 'SAMPLING_NUMBER' ,...
'h40000006' , 'ENTRY_ACQUIRE' ,...
'h40000007' , 'OBSERVATION_TIME' ,...
'h4000000B' , 'TIME_BETWEEN_STACKS' ,...
'h4000000C' , 'TRACK_NAME' ,...
'h4000000D' , 'COLLIMATOR1_NAME' ,...
'h4000000E' , 'COLLIMATOR1_POSITION' ,...
'h4000000F' , 'COLLIMATOR2_NAME' ,...
'h40000010' , 'COLLIMATOR2_POSITION' ,...
'h40000011' , 'BLEACH_TRACK' ,...
'h40000012' , 'BLEACH_AFTER_SCAN_NUMBER' ,...
'h40000013' , 'BLEACH_SCAN_NUMBER' ,...
'h40000014' , 'TRIGGER_IN' ,...
'h40000015' , 'TRIGGER_OUT' ,...
'h40000016' , 'IS_RATIO_TRACK' ,...
'h40000017' , 'BLEACH_COUNT' ,...
'h40000018' , 'SPI_CENTER_WAVELENGTH' ,...
'h40000019' , 'PIXEL_TIME' ,...
'h40000020' , 'ID_CONDENSOR_FRONTLENS' ,...
'h40000021' , 'CONDENSOR_FRONTLENS' ,...
'h40000022' , 'ID_FIELD_STOP' ,...
'h40000023' , 'FIELD_STOP_VALUE' ,...
'h40000024' , 'ID_CONDENSOR_APERTURE' ,...
'h40000025' , 'CONDENSOR_APERTURE' ,...
'h40000026' , 'ID_CONDENSOR_REVOLVER' ,...
'h40000027' , 'CONDENSOR_FILTER' ,...
'h40000028' , 'ID_TRANSMISSION_FILTER1' ,...
'h40000029' , 'ID_TRANSMISSION1' ,...
'h40000030' , 'ID_TRANSMISSION_FILTER2' ,...
'h40000031' , 'ID_TRANSMISSION2' ,...
'h40000032' , 'REPEAT_BLEACH' ,...
'h40000033' , 'ENABLE_SPOT_BLEACH_POS' ,...
'h40000034' , 'SPOT_BLEACH_POSX' ,...
'h40000035' , 'SPOT_BLEACH_POSY' ,...
'h40000036' , 'BLEACH_POSITION_Z' ,...
'h40000037' , 'ID_TUBELENS' ,...
'h40000038' , 'ID_TUBELENS_POSITION' ,...
'h40000039' , 'TRANSMITTED_LIGHT' ,...
'h4000003a' , 'REFLECTED_LIGHT' ,...
'h4000003b' , 'TRACK_SIMULTAN_GRAB_AND_BLEACH' ,...
'h4000003c' , 'BLEACH_PIXEL_TIME' ,...
'h50000000' , 'LASER' ,...
'h50000001' , 'LASER_NAME' ,...
'h50000002' , 'LASER_ACQUIRE' ,...
'h50000003' , 'LASER_POWER' ,...
'h60000000' , 'DETECTION_CHANNELS' ,...
'h70000000' , 'DETECTION_CHANNEL' ,...
'h70000003' , 'DETECTOR_GAIN' ,...
'h70000005' , 'AMPLIFIER_GAIN' ,...
'h70000007' , 'AMPLIFIER_OFFSET' ,...
'h70000009' , 'PINHOLE_DIAMETER' ,...
'h7000000B' , 'ENTRY_ACQUIRE' ,...
'h7000000C' , 'DETECTOR_NAME' ,...
'h7000000D' , 'AMPLIFIER_NAME' ,...
'h7000000E' , 'PINHOLE_NAME' ,...
'h7000000F' , 'FILTER_SET_NAME' ,...
'h70000010' , 'FILTER_NAME' ,...
'h70000013' , 'INTEGRATOR_NAME' ,...
'h70000014' , 'DETECTION_CHANNEL_NAME' ,...
'h70000015' , 'DETECTOR_GAIN_BC1' ,...
'h70000016' , 'DETECTOR_GAIN_BC2' ,...
'h70000017' , 'AMPLIFIER_GAIN_BC1' ,...
'h70000018' , 'AMPLIFIER_GAIN_BC2' ,...
'h70000019' , 'AMPLIFIER_OFFSET_BC1' ,...
'h70000020' , 'AMPLIFIER_OFFSET_BC2' ,...
'h70000021' , 'SPECTRAL_SCAN_CHANNELS' ,...
'h70000022' , 'SPI_WAVE_LENGTH_START' ,...
'h70000023' , 'SPI_WAVELENGTH_END' ,...
'h70000026' , 'DYE_NAME' ,...
'h70000027' , 'DYE_FOLDER' ,...
'h80000000' , 'ILLUMINATION_CHANNELS' ,...
'h90000000' , 'ILLUMINATION_CHANNEL' ,...
'h90000001' , 'ILL_NAME' ,...
'h90000002' , 'POWER' ,...
'h90000003' , 'WAVELENGTH' ,...
'h90000004' , 'ACQUIRE' ,...
'h90000005' , 'DETCHANNEL_NAME' ,...
'h90000006' , 'POWER_BC1' ,...
'h90000007' , 'POWER_BC2' ,...
'hA0000000' , 'BEAM_SPLITTERS' ,...
'hB0000000' , 'BEAM_SPLITTER' ,...
'hB0000001' , 'FILTER_SET' ,...
'hB0000002' , 'FILTER' ,...
'hB0000003' , 'BS_NAME' ,...
'hC0000000' , 'DATA_CHANNELS' ,...
'hD0000000' , 'DATA_CHANNEL' ,...
'hD0000001' , 'DATA_NAME' ,...
'hD0000004' , 'COLOR' ,...
'hD0000005' , 'SAMPLETYPE' ,...
'hD0000006' , 'BITS_PER_SAMPLE' ,...
'hD0000007' , 'RATIO_TYPE' ,...
'hD0000008' , 'RATIO_TRACK1' ,...
'hD0000009' , 'RATIO_TRACK2' ,...
'hD000000A' , 'RATIO_CHANNEL1' ,...
'hD000000B' , 'RATIO_CHANNEL2' ,...
'hD000000C' , 'RATIO_CONST1' ,...
'hD000000D' , 'RATIO_CONST2' ,...
'hD000000E' , 'RATIO_CONST3' ,...
'hD000000F' , 'RATIO_CONST4' ,...
'hD0000010' , 'RATIO_CONST5' ,...
'hD0000011' , 'RATIO_CONST6' ,...
'hD0000012' , 'RATIO_FIRST_IMAGES1' ,...
'hD0000013' , 'RATIO_FIRST_IMAGES2' ,...
'hD0000014' , 'DYE_NAME' ,...
'hD0000015' , 'DYE_FOLDER' ,...
'hD0000016' , 'SPECTRUM' ,...
'hD0000017' , 'ACQUIRE' ,...
'hFFFFFFFF' , 'END_SUBBLOCK' ...
);
SAMPLINGMODE_MAP = struct( ...
'x0' , 'Sample - No Average' ,...
'x1' , 'Line Average' ,...
'x2' , 'Frame Average' ,...
'x3' , 'Integration Mode' ...
);
CHANNELCOLORS = struct( ...
'BlockSize' , 'int32' ,...
'NumberColors' , 'int32' ,...
'NumberNames' , 'int32' ,...
'ColorsOffset' , 'int32' ,...
'NamesOffset' , 'int32' ,...
'Mono' , 'int32' ...
);
TIMESTAMPS = struct( ...
'Size' , 'int32' ,...
'NumberTimeStamps' , 'int32' ...
);
