LSM File Toolbox: TIFF_H.m - File Exchange

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Highlights from
LSM File Toolbox

channelinforead(fid, lsminf) CHANNELINFOREAD Read in channelinfo from Zeiss LSM file format
ifdread(fid) IFDREAD read IFD entries from TIFF file according to TIFF standard
lsminfo(filename) LSMINFO read headers and entry directories for Zeiss LSM files
scaninforead(fid, offset) SCANINFOREAD Read in scaninfo database of Zeiss LSM file format
structappend(struct, field, v... STRUCTAPPEND
structcombine(struct1, struct... STRUCTCOMBINE
structmap(tagcode, map, numpr... STRUCTMAP use struct as a map between field names and values
structread(fid, structdef); STRUCTREAD read in structured data
structsizeof(structdef) STRUCTSIZEOF Determine size (in bytes) of struct to be read
timestampsread(fid, lsminf) TIMESTAMPSREAD Read in actual timestamps from Zeiss LSM file format, do some
LSM_H.m
TIFF_H.m
contents.m
contents.m
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from LSM File Toolbox by Peter Li
Functions for reading info databases of Zeiss LSM confocal microscope files.

TIFF_H.m

% From the TIFF specification
%   Peter Li 30-Aug-05
%   Some rights reserved.  Licensed under Creative Commons: http://creativecommons.org/licenses/by-nc-sa/3.0/

CONTENTS_TIFF_H = {
    'ENTRY_LENGTH'      ;...
    'TIFFHEAD'          ;...
    'IFD_TAGMAP'        ;...
    'CONTENTS_TIFF_H'   ;...
};

ENTRY_LENGTH = 12;

TIFFHEAD = struct(                  ...
    'byte_order'    ,   '2*uchar'   ,...
    'tiff_id'       ,   'uint8'     ,...
    'ifd_offset'    ,   'uint32'    ...
);

% See toolbox/matlab/iofun/private/imtifinfo.mat
IFD_TAGMAP = struct(                            ...
    'x254'      ,   'NewSubFileType'            ,...
    'x256'      ,   'ImageWidth'                ,...
    'x257'      ,   'ImageLength'               ,...
    'x258'      ,   'BitsPerSample'             ,...
    'x259'      ,   'Compression'               ,...
    'x262'      ,   'PhotometricInterpretation' ,...
    'x273'      ,   'StripOffsets'              ,...
    'x277'      ,   'SamplesPerPixel'           ,...
    'x279'      ,   'StripByteCounts'           ,...
    'x284'      ,   'PlanarConfiguration'       ,...
    'x34412'    ,   'LSMInfoOffset'             ...
);

Highlights from LSM File Toolbox

Highlights from
LSM File Toolbox