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Flow Cytometry Data Reader and Visualization

4.0 | 7 ratings Rate this file 75 Downloads (last 30 days) File Size: 189 KB File ID: #8430 Version: 1.1
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Flow Cytometry Data Reader and Visualization


Robert Henson (view profile)


06 Sep 2005 (Updated )

Flow Cytometry Data Reader and Visualization Example

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This includes a function to read in the standard flow cytometry FCS format data and examples of how to visualize the data.


This file inspired Flow Plot, Tactics Toolbox, and Ratiometric Fret.

MATLAB release MATLAB 7.0.4 (R14SP2)
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Comments and Ratings (8)
27 Jun 2016 Martin Ziegler

I am getting an error, when using the dscatter function:
Error using histc
Edge vector must be monotonically non-decreasing

Any idea on what might be causing it?

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25 Feb 2016 Ruben

Ruben (view profile)

20 Jan 2016 Raphael

The file return errors for input with NaN values (not necessary a bad thing).

05 May 2014 F Poelwijk  
05 May 2014 F Poelwijk  
29 Jul 2013 arnold

arnold (view profile)

cool, but I cannot seem to set the marker size or non filled markers. Works fine with 'plot' mesh or grid, but not with 'msize:
>> h = dscatter(X, Y, 'msize', 20);
Error using scatter (line 53)
Too many input arguments.

Error in dscatter (line 170)
h =

It would also be nice if one could generate a gapless 2D image/array with the "density" as entries. Like the 2d projection of what ('plot', 'surf') actualy gives you.

On top of that I'd recommend catching the input "error" of horizontal vectors instead of vertical. It gives the user an error about equal sizes, you should just check for that and rotate the vectors if necessary ;)

28 Feb 2013 Raz Shimoni  
13 Sep 2005 Sean Wang

Finally! I've been waiting for a long time

23 Jul 2013 1.1

Add BSD license

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