Gives the shortest node-to-node distance along the edges of a graph for all node combinations.
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Updated 26 Dec 2007
No LicenseALLSPATH - solve the All Pairs Shortest Path problem
Rapidly returns the shortest node-to-node distance along the edges of a graph, for all nodes in the graph.
USAGE: B = allspath(A)
A = input distance matrix between nodes
B = shortest path distance matrix between all nodes
Notes:
(1) For a graph with n nodes, A is an n-by-n distance matrix giving the distances between adjacent nodes. Since the distance from point i to point j is the same as the distance from point j to point i, A must be a symmetric matrix
(2) The distance from a node to itself can either be entered as zero or infinity. (Either will produce a correct result.) This means that the diagonal elements of the matrix A must all be either zero or infinity.
(3) The distance between nodes that are not adjacent to each other must be entered as either zero or infinity. (Either will produce a correct result.) This means that the (i,j) and (j,i) elements of A, where i and j are non-adjacent nodes, must all be either zero or infinity.
(4) If the input graph is not "connected," meaning that some nodes cannot be reached from other nodes no matter how many edges are traversed, then the distances between nodes that cannot be connected will be returned as infinite.
(5) Distances between a node and itself are returned as zero.
(6) This function codifies an original algorithm created by the author.
(7) No warranties; use at your own risk.
(8) Written by Michael Kleder, October 2005.
Replaced a Statistics Toolbox function call from the provided example for use by users without the Statistics Toolbox. |
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typographical updates to comments and file exchange page |
Inspired: Dijkstra's Minimum Cost Path Algorithm
Suchetana Gupta (view profile)
Does this also return the exact path visited? Mine is a weighted network
Xuan Vinh Nguyen (view profile)
I think Matlab now provides a similar function:
http://www.mathworks.com.au/help/bioinfo/ref/graphallshortestpaths.html
MRR (view profile)
srinadh (view profile)
awesome,simple to use
srinadh (view profile)
Is there a way to find the path also along with the distance?
thanks
Ule (view profile)
Works nice for small graphs (100 nodes), but if the graph becomes a bit larger (say, 500 nodes) it takes forever and effectively freezes my laptop...
Thank you for putting in the effort to update the file with the new example for those of us lacking the Statistics Toolbox. :)
However, I still had some difficulty testing it. References were made to variables 'a' and 'b' that did not exist. I was able to run the example when I added the following code after "% distance matrix:"
>> k=(1:10); a=k(ones(1,10),:); b=a';
Thank you. PDIST does require the Statistics Toolbox, so I have removed it from the example and uploaded a replacement submission where the example does not use PDIST.
The example didn't work for me...
??? Undefined function or method 'pdist' for input arguments of type 'double'.
Do I need a special toolbox for this?
Works great for me, < 200-ish nodes. Thanks!
What a beautifully compact algorithm! Works fast for up to about 200-250 nodes. For more than that it works but uses a lot of memory. This is really*great for smallish (about 200 nodes) investigational type problems that I'm working on right now.
Doesn't work, fails with a "??? Out of memory. Type HELP MEMORY for your options." even tho my graph has 600 nodes & I have 1GB of RAM!
It give out of memory error even though my graph has only 702 nodes. :-)
There are a limit whenever we have a large graph. Out of memory proble...
Somebody tried?
G
But what happens it the graph is not undirected? I think it doesn't work...
It is indeed useful for my research!