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updated 26 days ago

Generic function and example code for performing LASSO on GLM by Dr. Soumya Banerjee

Generic function and example code for performing LASSO on GLM and using it for prediction (statistics, machine learning, optimization)

call_generic_lasso_glm_predict()

generic_lasso_glm_predict(X,y,str_distribution,str_link_f...

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updated 26 days ago

Generic function and example code for using neural networks by Dr. Soumya Banerjee

Generic function and example code for using neural networks for prediction. (machine learning, classification, statistics)

call_generic_neural_network()

generic_neural_network(X,T,parallel,iNumHidden)

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updated 30 days ago

Generic function for LASSO on logistic regression by Dr. Soumya Banerjee

Generic function and example code for LASSO on logistic regression. (classification, regression, machine learning)

call_generic_lasso_logistic()

generic_lasso_logistic(X,y,str_distribution,num_fold_cros...

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updated 1 month ago

Simple example code and generic function for random forests by Dr. Soumya Banerjee

Simple example code and generic function for random forests (checks out of bag errors) (statistics, mathematics, optimization)

call_generic_random_forests()

generic_random_forests(X,Y,iNumBags,str_method)

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updated 2 months ago

Simple example and generic function to perform PCA by Dr. Soumya Banerjee

Simple example and generic function to perform PCA(principle components analysis) (mathematics, statistics, optimization)

call_function_pca_plot()

function_pca_plot(data_matrix,categories,names)

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updated 3 months ago

Example code and generic function to perform LASSO on GLM by Dr. Soumya Banerjee

Generic function to perform LASSO on generalized linear model (GLM). (mathematics, optimization, regression)

call_custom_lasso_glm()

custom_lasso_glm(X,y,str_distribution,num_fold_cross_vali...

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updated 7 months ago

Function to perform Bayesian LASSO by Dr. Soumya Banerjee

Function to perform Bayesian LASSO (least absolute shrinkage and selection operator) (signal processing, mathematics, statistics)

bayesian_lasso_generic(X,Y)

call_bayesian_lasso()

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updated 8 months ago

Simple MATLAB example code and generic function to perform LASSO by Dr. Soumya Banerjee

Simple MATLAB example code and generic function to perform LASSO (optimization, statistics, regression)

call_lasso

lasso_generic(X,Y,iFold_cross_validation)

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updated 8 months ago

Bash script to compile MATLAB code in each directory by Dr. Soumya Banerjee

Iterative matlab compiler: this has Bash scripts to compile MATLAB code in each directory (statistics, simulation, mcc)

test_script()

test_script()

test_script()

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updated 8 months ago

Scripts to run MATLAB on cluster using bsub by Dr. Soumya Banerjee

This is a set of scripts to run MATLAB in batch mode on the cluster using bsub (statistics, simulation)

myplot.m

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updated 9 months ago

Simple example and generic function for kmeans clustering by Dr. Soumya Banerjee

Simple generic function and example to perform kmeans clustering (clustering, machine learning, mathematics)

kmeans_generic

call_kmeans()

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updated 9 months ago

Simple example and generic function for SVM binary classifier by Dr. Soumya Banerjee

Simple generic function that takes two labelled classes and trains SVM classifier. (classification, machine learning, optimization)

svm_classifier

svm_call

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updated 10 months ago

Bayesian Linear Regression by Dr. Soumya Banerjee

This is a set of MATLAB functions to do Bayesian linear regression (statistics, optimization, mathematics)

bayesian_regression

CALL_bayesian_regression

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updated 1 year ago

Graphical User Interface for Solving Ordinary Differential Equations for In-Vitro Infection by Dr. Soumya Banerjee

A graphical user interface to solve a set of ordinary differential equations (in-vitro infection) (data import, data export, gui)

odesolver_outline

odecall_eclipse_tcl_jv_local(target,infected1, ...

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updated 1 year ago

Wilcoxon rank-sum test and box plots for genes/compounds etc in healthy vs. disease by Dr. Soumya Banerjee

Does a Wilcoxon rank-sum test and creates box plot for genes etc in healthy vs. disease individuals (biostatistics, biotech, data import)

wilcoxon_ranksum_boxplot

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updated 1 year ago

t-test and box plots for genes/compounds etc in healthy vs. disease by Dr. Soumya Banerjee

Does a t-test and creates box plots for genes/compounds in healthy vs. disease individuals (statistics, biostatistics, biotech)

t_test_boxplot

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updated 1 year ago

healthy_disease_boxplot.zip by Dr. Soumya Banerjee

Box plots of measured quantity in healthy vs. disease in two cohorts (statistics, biostatistics, data import)

healthyvsdisease_box_plot_general

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updated 1 year ago

Linear regression for multiple category data with different slopes for each by Dr. Soumya Banerjee

The function does OLS and RMA regression on data that is categorized into two different categories (aerospace, biotech, communications)

regress_plot_twocategories_allslope

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updated almost 3 years ago

Linear regression with statistics for multiple category data by Dr. Soumya Banerjee

This function does linear regression with statistics for multiple category data (OLS and RMA) (aerospace, automotive, biotech)

regress_plot_twocategories

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updated 3 years ago

A Graphical User Interface for Solving Delay Differential Equations and doing Local Search by Dr. Soumya Banerjee

A GUI for solving a set of delay differential equations (DDEs) and local search for best solutions (biotech, data export, data import)

odesolver_outline

dde_auto_fit

dde_auto_fit_param(target,infected1,infected2,virus,beta,...

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updated 3 years ago

Monte Carlo Markov Chain for inferring parameters for an Ordinary Differential Equation model by Dr. Soumya Banerjee

This function uses a Monte Carlo Markov Chain algorithm to infer parameters for an ODE model (biotech, data export, data import)

mcmc_ode

analyze_mcmc(parallel)

test_gamma()

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updated 3 years ago

Graphical User Interface for Solving Ordinary Differential Equations by Dr. Soumya Banerjee

A Graphical User Interface for Solving Ordinary Differential Equations (Immune Response Model) (data export, data import, gui)

odecall_eclipse_tcl_jv_local(target,infected, ...

odesolver_outline(varargin)

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updated 3 years ago

Linear regression on log transformed data by Dr. Soumya Banerjee

A function that takes two column vectors and does linear regression on the data (statistics, mathematics, data import)

regress_custom(input_x,input_y,desc,x_label,y_label)

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updated almost 4 years ago

Graphical User Interface for Solving Ordinary Differential Equations by Dr. Soumya Banerjee

This function solves a special set of ordinary differential equations with a GUI (biotech, gui, simulation)

odesolver_outline

odecall_eclipse_tcl_jv_local(target,infected1, ...

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