Refine by Content Type

Refine by Time Frame

image thumbnail

updated 1 month ago

Modeling Synthetic Biology Systems with MATLAB and SimBiology by Fulden

Fulden (view profile)

SimBiology model used in the webinar: Modeling Synthetic Biology Systems with MATLAB and SimBiology (igem, metabolator, synthetic biology)

image thumbnail

updated 4 months ago

Launchpad msp_exp430g2553 Target by Yuriy

Yuriy (view profile)

Target for launchpad (embedded coder required) with msp430g2553 (launchpad, msp430g2, target)

Setup_mymsp430_target

launchpad_download(modelName,makertwObj)

mymsp430_make_rtw_hook(hookMethod, modelName, rtwRoot, te...

image thumbnail

updated 7 months ago

Example Deployable SimBiology® App for Evaluating PK/PD Drug Efficacy by Anita

Anita (view profile)

An example deployable MATLAB® app for simulating a mechanistic PK/PD model built using SimBiology®. (simbiology, gui)

TumorGrowthInhibition(varargin)

generateReport(filePath,hFig,tableData)

deployApp.m

image thumbnail

updated 1 year ago

Methyl salicylate synthesis.sbproj by Sander Wuyts

This file contains one of the models the KU Leuven-team used for the iGEM 2013 World Jamboree (igem, student competition, igem2013)

image thumbnail

updated 1 year ago

RGDS_Practical_Guide by Daniel/Ronald

MATLAB routines for the book: "Development of Innovative Drugs via Modeling with MATLAB". (simulation, pharmaceutical, simulink)

AUC

CTSbasics.m

DDEconst

image thumbnail

updated 1 year ago

App Builder for SimBiology Models by Fulden

Fulden (view profile)

Tool to automate the process of creating standalone, model-exploration apps for SimBiology model (simbiology, pkpd, systems biology)

buildApp(inputSet, compileFlag)

createSlider(f, pNum, pInfo)

createUI(model, appName)

image thumbnail

updated 2 years ago

Renin-Angiotensin-System (RAS) model for SimBiology by Sven Mesecke

Provides a SimBiology model implementation of the Renin-Angiotensin-System (simbiology, pkpd, systems biology)

image thumbnail

updated 2 years ago

Continuous Stirred Tank Bioreactor (CSTR) SimBiology model by Sven Mesecke

SimBiology project containing a simple CSTR bioreactor model (simbiology, simbiology model, biotech)

image thumbnail

updated 2 years ago

Generic SimBiology Physiologically-based Pharmacokinetic (PBPK) model by Sven Mesecke

SimBiology implementation of a generic PBPK model. Human fasted, Human fed and Rat physiologies. (simbiology, simbiology model, pbpk)

calculateParacellularAbsorption(DrugLogP, DrugMolecularWe...

calculateTissuePartition(...

image thumbnail

updated 2 years ago

Convert SimBiology(R) model to COBRA Toolbox model by Sven Mesecke

Use SimBiology for dynamic modeling and COBRA Toolbox algorithms for constraint-based modeling. (simbiology, simbiology export, systems biology)

sbioexportCobra(simbioModel,varargin)

image thumbnail

updated 2 years ago

BerkeleyMadonna model import function for SimBiology by Sven Mesecke

Imports ODE models in the BerkeleyMadonna(TM) format into a SimBiology(R) model (simbiology, simbiology import, systems biology)

sbioimportBerkeleyMadonna.m

image thumbnail

updated almost 3 years ago

SCOPE: interactively tabulate SEER excel variables by Rex Cheung

This takes SEER excel column data interactively, tabulate them, write back in table format. (data import, data export, optimization)

output=xls2tabulate2xls(xlsfilename)

image thumbnail

updated almost 3 years ago

Physiologically-based Pharmacokinetic (PBPK) model for SimBiology by Sven Mesecke

Provides a PBPK and a Renin-Angiotensin system model for SimBiology (simbiology, simbiology model, pbpk)

calculateParacellularAbsorption(DrugLogP, DrugMolecularWe...

calculateTissuePartition(...

image thumbnail

updated 3 years ago

SimBiology implementation of PBPK model for Trichloroethylene (TCE) by Fulden

Fulden (view profile)

SimBiology model describing the metabolism and distribution of TCE using a human PBPK model (simbiology, pbpk, tce)

image thumbnail

updated 3 years ago

Using SimBiology for Mechanism-Based PK/PD Modeling in Preclinical & Discovery by Fulden

Fulden (view profile)

Examples used in the March 2012 webinar: Using SimBiology for Mechanism-Based PK/PD Modeling (simbiology, pkpd, antibacterial)

antibioticDoseResponseGUI.m

doseResponse(mObj, drugName, strainName, PKPD, MIC)

doseResponsePlot(X1, Y1)

image thumbnail

updated almost 4 years ago

get reaction rates out of SimBiology by Frank Sommerhage

This tool pulls the reaction rates out of your SimBiology model. (simbiology, modeling, simulation)

rateout(time)

image thumbnail

updated almost 4 years ago

SimBiology model for PK/PD of anticancer drugs by Fulden

Fulden (view profile)

SimBiology model describing the effect of anticancer drugs on tumor growth kinetics (simbiology, pkpd, tumor growth kinetics)

image thumbnail

updated almost 4 years ago

SimBiology model for Target-Mediated Drug Disposition (TMDD) by Fulden

Fulden (view profile)

SimBiology implementation of the Target-Mediated Drug Disposition (TMDD) model (simbiology, targetmediated drug d..., tmdd)

image thumbnail

updated almost 4 years ago

SimBiology model for PK/PD of antibacterial drugs by Fulden

Fulden (view profile)

SimBiology model for PK/PD of antibacterial drugs (simbiology, pkpd, antibacterial drug)

image thumbnail

updated 4 years ago

Modeling Biology with SimBiology: An Introduction for iGEM Teams by Fulden

Fulden (view profile)

SimBiology model used in webinar: Modeling Biology with SimBiology: An Introduction for iGEM Teams (simbiology, igem, repressilator)

image thumbnail

updated 4 years ago

Fitting with MATLAB: Statistics, Optimization, and Curve Fitting by Richard Willey

Richard Willey (view profile)

Demo code and data for the "Fitting with MATLAB" webinar (poisson regression, logistic regression, orthogonal regression)

evalTumorWeight(t , p)

objFcn(p , tObs, drug)

CensoredData.m

image thumbnail

updated 6 years ago

Chinese Matlab Digest: Matlab Technical Bulletin by Hong Zhang

Hong Zhang (view profile)

Chinese Matlab Digest is the first matlab digest published in Chinese by www.iLoveMatlab.cn (digest, matlab digest, chinese digest)

image thumbnail

updated 7 years ago

create_input_files.m by Marc Turcotte

Extracts ODE from model into stand-alone Matlab callable form (simbiology ode creato...)

image thumbnail

updated 7 years ago

create_input_files.m by Marc Turcotte

Extracts ODE from model into stand-alone Matlab callable form (simbiology ode creato...)

Contact us