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updated 18 hours ago

bbrister/SIFT3D by Blaine Rister

3D SIFT keypoints and feature descriptors (image processing, signal processing, 3d)

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updated 9 days ago

conversion of Image to black & white image by MANISH KUMAR SHARMA

convertion of image to black and white image using slicing image without background. (biotech, image processing, remote sensing)

slicing__image_without_background.m

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updated 12 days ago

MATLAB TUTORIAL by MANISH KUMAR SHARMA

MATLAB for new candidate (image processing, biotech, signal processing)

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updated 16 days ago

Plotly | Online MATLAB Graphing by Chris

Chris (view profile)

Publish your MATLAB figures to the web with one line of code. (plot, data export, gui)

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updated 16 days ago

gapreconst2 by ahartmann

Reconstruction of Physiological time-series (biotech, blood pressure, ecg)

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updated 16 days ago

Raster Image Correlation Spectroscopy by Molly Rossow

Performs raster image correlation analysis spectroscopy (RICS) (image analysis, microscopy, fluorescence)

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updated 16 days ago

gapreconst by ahartmann

Reconstruction of Physiological time-series (filter, ecg, signal processing)

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updated 16 days ago

HIVid by ahartmann

Identification of HIV time-series (biotech, system identification, dsp)

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updated 16 days ago

Ratiometric FRET by Jakub Nedbal

Data analysis code and example datasets for ratiometric FRET analysis (biotech, pharmaceutical, fcs)

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updated 1 month ago

Finding functional networks in brain fMRI data using stepwise clustering by Janki Mehta

fMRI Signal Processing (biotech, clustering)

apcluster.m

ACS_clustering( cluster_no )

affinity_propagation( S )

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updated 3 months ago

writeFCS(fname, DATA, TEXT, OTHER) by Jakub Nedbal

writeFCS creates FCS file specified by Data File Standard for Flow Cytometry (biotech, pharmaceutical, fcs)

writeFCS(fname, DATA, TEXT, OTHER)

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updated 3 months ago

Measure Myelin-to-Axon Diameter by steed huang

This Matlab example M-file is to calculate the g-ratio for Scanning Electronic Microscopy. (image processing, statistics, medical)

gRatioV1.m

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updated 6 months ago

Medical Image Processing Toolbox by Alberto Gomez

Classes and functions for N-dimensional medical image processing, inspired by ITK (image processing, data export, data import)

PointInFrustum(p, frustum,varargin)

PointInTriangle(p, a,b,c,varargin)

PointInTriangle3D(p, a,b,c)

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updated 8 months ago

density estimator by Vadim Smolyakov

gaussian density estimator (machine learning, biotech)

density_est.m

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updated 8 months ago

ReadPhilipsScanPhysLog(filename, channels, skipprep) by Paul Groot

ReadPhilipsScanPhysLog.m reads Philips scanphyslog files, which are created by Philips MRI scanners. (mri, philips, physiological)

ReadPhilipsScanPhysLog(filename, channels, skipprep)

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updated 9 months ago

fexact( varargin ) by Michael Boedigheimer

Hypergeometric cumulative distribution (left, right and two-tailed) including permutation testing. (probability, statistics, hypergeometric)

fexact( varargin )

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updated 9 months ago

LDA for high dimension small sample size data by Bilwaj Gaonkar

Linear discriminant analysis when the data dimensionality is high and sample size is much smaller (medical, image analysis, signal processing)

lda_kernelized.m

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updated 10 months ago

Bayesian Linear Regression by Dr. Soumya Banerjee

This is a set of MATLAB functions to do Bayesian linear regression (statistics, optimization, mathematics)

bayesian_regression

CALL_bayesian_regression

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updated 11 months ago

Find Core Toolbox, version 2.0 by David Snyder

MATLAB implementation of the FindCore and FindCore2 algorithms (toolbox, biotech, nmr)

add2pdb_ensemble(pdb_conformations,collected_conformers_in)

deflatten_pdb_conformations(flat_pdb_conformations, num_m...

dlmcell(file,cell_array,varargin)

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updated 11 months ago

Clinical Test Performance by Giuseppe Cardillo

The test calculate the performance of a clinical test based on the Bayes theorem (pharmaceutical, biotech, bayes theorem)

partest.m

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updated 12 months ago

Preclinical PKPD modeling by Peter Gennemark

Classes for fundamental PKPD modeling in drug discovery (no support for a NLME modeling). (biotech, simulation, medical)

example_fit_ev_iv()

example_fit_inf()

example_readExcel_PKPD_writePowerPoint()

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updated 1 year ago

MArray by junbai wang

MArray: analysing single, replicated or reversed microarray experiments. (biotech, pharmaceutical, analysis)

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updated 1 year ago

MCGH by junbai wang

Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridi (biotech, pharmaceutical, analysis)

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updated 1 year ago

Wilcoxon rank-sum test and box plots for genes/compounds etc in healthy vs. disease by Dr. Soumya Banerjee

Does a Wilcoxon rank-sum test and creates box plot for genes etc in healthy vs. disease individuals (biostatistics, biotech, data import)

wilcoxon_ranksum_boxplot

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updated 1 year ago

t-test and box plots for genes/compounds etc in healthy vs. disease by Dr. Soumya Banerjee

Does a t-test and creates box plots for genes/compounds in healthy vs. disease individuals (statistics, biostatistics, biotech)

t_test_boxplot

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updated 1 year ago

healthy_disease_boxplot.zip by Dr. Soumya Banerjee

Box plots of measured quantity in healthy vs. disease in two cohorts (statistics, biostatistics, data import)

healthyvsdisease_box_plot_general

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updated 1 year ago

Linear regression for multiple category data with different slopes for each by Dr. Soumya Banerjee

The function does OLS and RMA regression on data that is categorized into two different categories (aerospace, biotech, communications)

regress_plot_twocategories_allslope

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updated 1 year ago

FCS data reader by Laszlo Balkay

Laszlo Balkay (view profile)

Read FCS 2.0 and FCS 3.0 format flow cytometry files (biotech, pharmaceutical, flow cytometry)

fca_readfcs(filename)

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updated 1 year ago

Active geometric shape models by Quan Wang

Quan Wang (view profile)

The active geometric shape model is a novel approach for fitting geometric shapes in images. (image processing, mathematics, optimization)

AGSM Canvas

arb_ellipse_in_image(m,n,xc,yc,a,b,phi)

circleHough(I,rmin,rmax,P,FS)

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updated 1 year ago

Cross Section Isosurface by Evan

Evan (view profile)

easily plot and color 3D data (3d, data exploration, figure)

CrossSectionIsosurface(density3D, varargin)

testCrossSectionIsosurface

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updated 1 year ago

App Builder for SimBiology Models by Fulden

Fulden (view profile)

Tool to automate the process of creating standalone, model-exploration apps for SimBiology model (simbiology, pkpd, systems biology)

buildApp(inputSet, compileFlag)

createSlider(f, pNum, pInfo)

createUI(model, appName)

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updated 1 year ago

Flexible and Fast Spike Raster Plotting by Jeffrey Chiou

Plots spike rasters from spike times or binary trains. Faster than most implementations. (biotech, data exploration, neuroscience)

plotSpikeRaster(spikes,varargin)

testSpikeRasterPlotting.m

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updated 1 year ago

Decision Tree and Decision Forest by Quan Wang

Quan Wang (view profile)

This software implements decision tree/forest classifier in C++/MEX. (image processing, pattern recognition, machine learning)

TrainDecisionForest.m

RunDecisionForest(X,forestPath)

demo.m

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updated 1 year ago

TEC-Controller by Mario Tuerschmann

TEC-Controller plug-in - controls your TEC with a temperature accuracy of 0.001 K (tec, pletier, laser)

TecController

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updated almost 2 years ago

CODIS by Giuseppe Cardillo

Combined DNA Index System: a GUI tool for forensic paternity lawsuit (gui, biotech)

CODIS(varargin)

CODIS2(KC,x,y,Z)

CODIS3(handles,KC)

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updated almost 2 years ago

Convert Gromacs v 4.5 trajectory files into MatLab matrix by Evan

Evan (view profile)

Convert Gromacs trajectory files (.trr) into 3D matrix in matlab. (matlab convert conver..., biotech, simulation)

readGmx2Matlab(coordFile, start_frame, end_frame)

trr2matlab( trajFile, varargin )

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updated almost 2 years ago

Droplet Video Proccessor - code 1 of 3 by Matthew Moynihan

This code processes video of droplet production and does statistics on each droplet made. (video processing, droplets, biotech)

BWSizerA(videoBlock, dim, fStruct)

BlackOut(Image, rect, BLKrect, val)

findFilterNumA(I, rect)

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updated almost 2 years ago

goldensection.m by Aamir Alaud Din

Find optimal point of a single variable function using golden section search. (aerospace, automotive, biotech)

goldensection(f,a,b,uncertain)

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updated almost 2 years ago

fibonacci.m by Aamir Alaud Din

Find optimal point of a unimodal function (optimization, aerospace, automotive)

fibonacci(f,a,b,n)

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updated almost 2 years ago

dichotomous.m by Aamir Alaud Din

Finds optimal point of a single variable functoin (optimization, aerospace, automotive)

dichotomous(f,a,b,n)

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updated almost 2 years ago

regulafalsi.m by Aamir Alaud Din

Find root of a single variable function (aerospace, automotive, biotech)

regulafalsi(f,a,b,epsilon)

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updated almost 2 years ago

secant.m by Aamir Alaud Din

Find the root of an equation using secant's method (aerospace, automotive, biotech)

secant(f,xo,x1,epsilon)

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updated almost 2 years ago

newton.m by Aamir Alaud Din

Find the root of an equation using newton's method (aerospace, automotive, biotech)

newton(f,g,xo,epsilon)

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updated almost 2 years ago

Create a 3-Way array from excel files by Aamir Alaud Din

The program reads data from excel files and writes a three way data array (biotech, communications, finance)

prepare4mXLSX

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updated almost 2 years ago

bisection.m by Aamir Alaud Din

Root finding by bisection method (root, aerospace, automotive)

bisection(f,a,b,epsilon)

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updated almost 2 years ago

imread for multiple life science image file formats by Christoph Moehl

imports images and metadata using the LOCI Bioformats package (data import, biotech, zvi)

imreadBF(datname,zplanes,tframes,channel)

imreadBFmeta(datname)

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updated 2 years ago

read and write CAD Data files using matlab (DX format) by Evan

Evan (view profile)

read and write CAD data in a DX format (bioinformatics, biotech, pdb)

dx2mat(readFile)

mat2dx(DXdata)

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updated 2 years ago

read and write PDB files using matlab by Evan

Evan (view profile)

These two programs accept and output a variety of PDB file-formatted data (bioinformatics, biotech, pdb)

mat2pdb(input)

pdb2mat(readFile)

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updated 2 years ago

Flow Cytometry Data Reader and Visualization by Robert Henson

Robert Henson (view profile)

Flow Cytometry Data Reader and Visualization Example (biotech, pharmaceutical, flow)

Flow Cytometry Data Reader and Plotting Example

dscatter(X,Y, varargin)

fcsread(filename)

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updated 2 years ago

Radiation Treatment Planning Optimization Toy Example by Haitham Hindi

This program is a stand-alone toy example of radiation treatment planning(RTP) optimization (optimization, distributed, biotech)

Main()

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