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updated 9 hours ago

Plotly | Online MATLAB Graphing by Chris

Publish your MATLAB figures to the web with one line of code. (plot, data export, gui)

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updated 4 days ago

Preclinical PKPD modeling by Peter Gennemark

Classes for fundamental PKPD modeling in drug discovery (no support for a NLME modeling). (biotech, simulation, medical)

example_fit_ev_iv()

example_fit_inf()

example_readExcel_PKPD_writePowerPoint()

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updated 14 days ago

MArray by junbai wang

MArray: analysing single, replicated or reversed microarray experiments. (biotech, pharmaceutical, analysis)

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updated 14 days ago

MCGH by junbai wang

Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridi (biotech, pharmaceutical, analysis)

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updated 1 month ago

Wilcoxon rank-sum test and box plots for genes/compounds etc in healthy vs. disease by Soumya Banerjee

Does a Wilcoxon rank-sum test and creates box plot for genes etc in healthy vs. disease individuals (biostatistics, biotech, data import)

wilcoxon_ranksum_boxplot

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updated 1 month ago

t-test and box plots for genes/compounds etc in healthy vs. disease by Soumya Banerjee

Does a t-test and creates box plots for genes/compounds in healthy vs. disease individuals (statistics, biostatistics, biotech)

t_test_boxplot

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updated 1 month ago

healthy_disease_boxplot.zip by Soumya Banerjee

Box plots of measured quantity in healthy vs. disease in two cohorts (statistics, biostatistics, data import)

healthyvsdisease_box_plot_general

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updated 2 months ago

Linear regression for multiple category data with different slopes for each by Soumya Banerjee

The function does OLS and RMA regression on data that is categorized into two different categories (aerospace, biotech, communications)

regress_plot_twocategories_allslope

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updated 4 months ago

FCS data reader by Laszlo Balkay

Read FCS 2.0 and FCS 3.0 format flow cytometry files (biotech, pharmaceutical, flow cytometry)

fca_readfcs(filename)

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updated 5 months ago

Active geometric shape models by Quan Wang

The active geometric shape model is a novel approach for fitting geometric shapes in images. (image processing, mathematics, optimization)

AGSM Canvas

DD=myspline(D,theta)

GI=gaussianBlur(I,s)

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updated 5 months ago

Cross Section Isosurface by Evan

easily plot and color 3D data (3d, data exploration, figure)

CrossSectionIsosurface(density3D, varargin)

testCrossSectionIsosurface

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updated 6 months ago

App Builder for SimBiology Models by Asawari Samant

Tool to automate the process of creating standalone, model-exploration apps for SimBiology model (simbiology, pkpd, systems biology)

buildApp(inputSet, compileFlag)

createSlider(f, pNum, pInfo)

createUI(model, appName)

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updated 6 months ago

Flexible and Fast Spike Raster Plotting by Jeffrey Chiou

Plots spike rasters from spike times or binary trains. Faster than most implementations. (biotech, data exploration, neuroscience)

plotSpikeRaster(spikes,varargin)

testSpikeRasterPlotting.m

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updated 6 months ago

Decision Tree and Decision Forest by Quan Wang

This software implements decision tree/forest classifier in C++/MEX. (image processing, pattern recognition, machine learning)

TrainDecisionForest(X,Y,forestPath,forestSize,depth,noc)

[Y,P]=RunDecisionForest(X,forestPath)

demo.m

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updated 8 months ago

TEC-Controller by Mario Tuerschmann

TEC-Controller plug-in - controls your TEC with a temperature accuracy of 0.001 K (tec, pletier, laser)

TecController

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updated 9 months ago

Fisher’s Exact Test by Michael Boedigheimer

Hypergeometric cumulative distribution (left, right and two-tailed) including permutation testing. (probability, hypergeometric, genetics)

fexact( varargin )

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updated 10 months ago

CODIS by Giuseppe Cardillo

Combined DNA Index System: a GUI tool for forensic paternity lawsuit (gui, biotech)

CODIS(varargin)

CODISINCEST(handles,KC)

CODISswap(a,b,c)

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updated 11 months ago

Convert Gromacs v 4.5 trajectory files into MatLab matrix by Evan

Convert Gromacs trajectory files (.trr) into 3D matrix in matlab. (matlab convert conver..., biotech, simulation)

readGmx2Matlab(coordFile, start_frame, end_frame)

trr2matlab( trajFile, varargin )

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updated 11 months ago

Droplet Video Proccessor - code 1 of 3 by Matthew Moynihan

This code processes video of droplet production and does statistics on each droplet made. (video processing, droplets, biotech)

BWSizerA(videoBlock, dim, fStruct)

BlackOut(Image, rect, BLKrect, val)

findFilterNumA(I, rect)

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updated 12 months ago

goldensection.m by Aamir Alaud Din

Find optimal point of a single variable function using golden section search. (aerospace, automotive, biotech)

goldensection(f,a,b,uncertain)

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updated 12 months ago

fibonacci.m by Aamir Alaud Din

Find optimal point of a unimodal function (optimization, aerospace, automotive)

fibonacci(f,a,b,n)

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updated 12 months ago

dichotomous.m by Aamir Alaud Din

Finds optimal point of a single variable functoin (optimization, aerospace, automotive)

dichotomous(f,a,b,n)

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updated 12 months ago

regulafalsi.m by Aamir Alaud Din

Find root of a single variable function (aerospace, automotive, biotech)

regulafalsi(f,a,b,epsilon)

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updated 12 months ago

secant.m by Aamir Alaud Din

Find the root of an equation using secant's method (aerospace, automotive, biotech)

secant(f,xo,x1,epsilon)

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updated 12 months ago

newton.m by Aamir Alaud Din

Find the root of an equation using newton's method (aerospace, automotive, biotech)

newton(f,g,xo,epsilon)

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updated 12 months ago

Create a 3-Way array from excel files by Aamir Alaud Din

The program reads data from excel files and writes a three way data array (biotech, communications, finance)

prepare4mXLSX

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updated 12 months ago

bisection.m by Aamir Alaud Din

Root finding by bisection method (root, aerospace, automotive)

bisection(f,a,b,epsilon)

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updated 1 year ago

imread for multiple life science image file formats by Christoph Moehl

imports images and metadata using the LOCI Bioformats package (data import, biotech, zvi)

[vol]=imreadBF(datname,zplanes,tframes,channel)

meta=imreadBFmeta(datname)

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updated 1 year ago

read and write CAD Data files using matlab (DX format) by Evan

read and write CAD data in a DX format (bioinformatics, biotech, pdb)

dx2mat(readFile)

mat2dx(DXdata)

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updated 1 year ago

read and write PDB files using matlab by Evan

These two programs accept and output a variety of PDB file-formatted data (bioinformatics, biotech, pdb)

mat2pdb(input)

pdb2mat(readFile)

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updated 1 year ago

Flow Cytometry Data Reader and Visualization by Robert Henson

Flow Cytometry Data Reader and Visualization Example (biotech, pharmaceutical, flow)

Flow Cytometry Data Reader and Plotting Example

dscatter(X,Y, varargin)

fcsread(filename)

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updated 1 year ago

writeFCS by Jakub Nedbal

writeFCS creates FCS file specified by Data File Standard for Flow Cytometry (biotech, pharmaceutical, fcs)

writeFCS(fname, DATA, TEXT)

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updated 1 year ago

Radiation Treatment Planning Optimization Toy Example by Haitham Hindi

This program is a stand-alone toy example of radiation treatment planning(RTP) optimization (optimization, distributed, biotech)

Main()

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updated 1 year ago

Easy Sensitivity (Tornado) Plot Function by Richard McCulloch

This function makes a tornado sensitivity plot and returns the sensitivity values. (aerospace, biotech, data export)

TorPlot(data,names,sensitivity,save,fh)

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updated 1 year ago

Glucose/Insulin modeling by DaveA Albers

Modeling of glucose/insulin dynamics (biotech, simulation, medical)

feeding(integration_iterates, I_baseline, time_steps_per_...

feeding(integration_iterates, I_baseline, time_steps_per_...

feeding(integration_iterates, I_baseline, time_steps_per_...

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updated 1 year ago

Nipals algorithm for Principle Component Analysis by Qiaonan Duan

This function is written largely based on nipals function from R chemometrics package. (nipals, principal component a..., pca)

nipals(X,a,it,tol )

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updated 1 year ago

Reading Philips MR Physiolgy logfiles by Paul Groot

ReadPhilipsScanPhysLog.m reads Philips scanphyslog files, which are created by Philips MRI scanners. (mri, philips, physiological)

ReadPhilipsScanPhysLog(filename, channels, skipprep)

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updated 1 year ago

Negative Binomial Regression by Surojit Biswas

NB2 Negative-Binomial regression. (statistics, mathematics, optimization)

nbreg( x, y, varargin )

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updated 1 year ago

MPCC Solution of Genetic Regulatory Circuit Design Problems by James Allison

Demonstration of a novel MPCC-based technique for solving gene circuit design problems. (optimization, simulation, biotech)

MPCC_con()

constraint(xd,p)

master_genecircuit()

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updated 1 year ago

Medical Image Processing Toolbox by Alberto Gomez

Classes and functions for N-dimensional medical image processing, inspired by ITK (image processing, data export, data import)

[img info]=read_mhd(filename)

circle3DMesh(c,r,d,varargin)

coneImage(points_axis, points_side, ref_im)

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updated 1 year ago

"April, 2011 Image Processing with MATLAB" webinar demo files by Takuya Otani

MATLAB demo files used in the image processing webinar held on April, 2011 in Japan. (image processing, biotech)

BinaryClose.m

BinaryOpen.m

BinaryOpenClose.m

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updated 1 year ago

SIMULATION OF PULL-IN EFFECT IN MEMS CAPACITOR USING GUI IN MATLAB by piyush kant

near the 2/3rd of total gap between the plates the response of the mems capacitor gets unstable. (mems, capacitor, simulation)

piyush(varargin)

sim1(varargin)

sim2(varargin)

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updated 1 year ago

Four parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a four points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L4Pinv(cf,y)

[cf G]=L4P(x,y,varargin)

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updated 1 year ago

N-Dimensional Trapezoidal integral by Mohammed Sadeq Al-Rawi

See title. (communications, biotech, image processing)

trapezoidal_rule_nd_integral(x, mat, N)

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updated 1 year ago

TACTICS Toolbox by Raz Shimoni

TACTICS is an interactive platform for customized high content bioimaging analysis. (image processing, data exploration, biotech)

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updated 1 year ago

Renin-Angiotensin-System (RAS) model for SimBiology by Sven Mesecke

Provides a SimBiology model implementation of the Renin-Angiotensin-System (simbiology, pkpd, systems biology)

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updated 1 year ago

Continuous Stirred Tank Bioreactor (CSTR) SimBiology model by Sven Mesecke

SimBiology project containing a simple CSTR bioreactor model (simbiology, simbiology model, biotech)

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updated 1 year ago

Chronic Lemphocytic Leukemia Cell Segmentation Using Watershed and optimal Thresholding by Emad Mohammed

this work is to segment the cytoplasm and the nucleus of the CLL microscopic blood images (image processing, biotech)

Chronic_Lemphocytic_Leukemia_Cell_Segmentation_Using_Wate...

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updated almost 2 years ago

Similarity classifier with OWA operators by Pasi Luukka

Toolbox presents vector based classification method which uses similarity measures and OWA operators (classification, fuzzy, biotech)

[Classification_accuracy,p1,m1,classes]=simclass(datalear...

[Mean_accuracy, Variance,p1,m1,Means,Vars,Maxsf,Minsf]=si...

calcfit(data, ideals, y)

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updated almost 2 years ago

Helical Swimming Simulator by Bruce

Simulates a rigid rotating helix at low Reynolds number. (simulation, physics, biotech)

BuildMatrixRegStokes3D(x,X0,N,N0,d)

ExpFlagellumFullTubeMatrix(Sep,Fila_Radius,Radius,Length,...

F_T_D_RSM(R, a, lambda, L)

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