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updated 15 days ago

Patch-based sparse representation for brain image segmentation by li wang

li wang (view profile)

This is a Matlab demo code of patch-based sparse representation for brain image segmentation. (patch, image segmentation, patch based sparse la...)

Demo_sparse_segmentation.m

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updated 21 days ago

2d and 3d brain plots by Jeremy Manning

Quickly and easily create 2d and 3d plots of fMRI data. (fmri, pcolor, 2d)

cmu_to_mat.m

construct_meta.m

getTightSubplotHandles.m

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updated 1 year ago

Intensity normalization of Brain volume by Alessandro Crimi

Intensity normalization of Brain volume given a reference volume (nifti, brain, intensity normalizati...)

emgm(X, init, prob_prior)

get_nii_frame(fileprefix)

hellier_hist_normalization_gmm( file_name_template, file_...

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updated almost 2 years ago

Generate synthetic fMRI data by Jeremy Manning

This program is useful for debugging fMRI analyses and models. (fmri, brain, generate)

generate_data(meta,X,SNR,TR,sim_hemodynamics,outfile,vara...

make_nii(varargin)

save_nii(nii, fileprefix, old_RGB)

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updated almost 2 years ago

DICOM Example Files by Jeff Mather

Jeff Mather (view profile)

Example DICOM files containing MR images of the brain. (medical, dicom, dicominfo)

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updated 2 years ago

Brain Message v 1.0 to write secret messages into fMRI by Vanessa

Vanessa (view profile)

Write secret messages in fMRI data to be uncovered with independent component analysis (fmri, ica, independent component...)

BrainMessage(message,outname)

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updated almost 3 years ago

Estimating Time-varying Neural Interactions by Hideaki Shimazaki

Matlab code for estimating time-varying interactions of neurons from spike data. (statistics, mathematics, optimization)

BayesFactor(model,cell_id)

BayesFactor(model,cell_id)

CompSync(raw,D,r)

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updated 3 years ago

Electrocorticography / intracranial EEG visualizer by Matthew Davidson

This is a tool for plotting iEEG/ECog data on a brain. (ieeg, ecog, visualization)

ft_group_ieeg_elec_plot(varargin)

keeponly_electrodes(elec, wh)

plot_brain(surf_brain, viewpoint, varargin)

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updated 3 years ago

Function for Viewing MRI Slices by Aras

Aras (view profile)

Allows the viewing of slices of MRI data in the NIFTI format. (nifti, mri, slice)

splic(x,y,z,t)

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updated almost 4 years ago

IPN_voxelGraph by Xi-Nian Zuo

Functions to Generate Large Correlation Matrix and Sparse Matrix of Huge Graph. (correlation, brain, connectome)

IPN_calLCAM(data, thresh, nblock, connType)

IPN_fastCorr(X, Y)

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updated 5 years ago

MRI Brain Segmentation by Robert Bemis

Robert Bemis (view profile)

Neuroimaging Case Study for seminars and webinars. (medical, segmentation, gray)

StepThru(mfile,ws)

UpdateSliceOMatic(X,hSlico)

[x,y]=limits(a)

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updated 5 years ago

xjView, viewing program for SPM2 and SPM5 by Xu Cui

Xu Cui (view profile)

p-value slider, single-click to get anatomical description (imaging, mri, spm)

xjview(varargin)

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updated 5 years ago

MRI 3D interactive viwer by Ibraheem Al-Dhamari

Read and View ANALYZE images format. (mri, fmri, analyze)

MRIViewerB(varargin)

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updated 5 years ago

IPN tools for Test-Retest Reliability Analysis by Xi-Nian Zuo

This is one part of my IPN toolbox, aiming at the reliability analysis of neuroimaging meaures. (probability, icc, ccc)

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updated almost 7 years ago

DTI and Fiber Tracking by Dirk-Jan Kroon

Dirk-Jan Kroon (view profile)

Diffusion MRI (DTI), calculates FA, ADC, Vector Field, and will track and visualize neural tracts. (image analysis, dti, diffusion)

[ADC,FA,VectorF,DifT]=DTI(DTIdata,parameters)

[info] =gipl_read_header(fname)

fibers=FT(FA,VectorF,Roi,parameters)

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updated almost 9 years ago

BrainMaps Analyze by Shawn Mikula

BrainMaps Analyze is a powerful tool for applying image analysis routines to BrainMaps.org high reso (medical, brain, image processing)

bmanalyze( varargin )

bmanalyzeGetPaths( varargin )

bmanalyzeInfo( varargin )

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