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updated 1 year ago

Significance Analysis of Microarrays (SAM) using Matlab by Eric

SAM is a popular method of finding differentially expressed genes through a microarray experiment. (significance analysis..., sam, gene expression)

bal_perm (seq_samp)

build_dperm (data, cl, type_mt, seq_samp)

d_null (d, type_mt)

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updated 1 year ago

Benjamini & Hochberg/Yekutieli Procedure for Controlling False Discovery Rate by David Groppe

Benjamini & Hochberg/Yekutieli false discovery rate control procedure for a set of statistical tests (false discovery rate, fdr, bonferroni)

[h crit_p adj_p]=fdr_bh(pvals,q,method,report)

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updated 1 year ago

Mass Univariate ERP Toolbox by David Groppe

Functions for performing and visualizing mass univariate analyses of event-related potentials. (massively univariate ..., mass univariate analy..., eventrelated potentia...)

EEG=bin_info2EEG(EEG_or_fname,blf_fname,save_fname,verble...

GND=baselineGND(GND,bsln_wind,verblevel)

GND=bin_dif(GND,binA,binB,dif_bindesc,dif_ccode,dif_ccdescr)

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updated 2 years ago

one sample/paired samples permutation t-test with correction for multiple comparisons by David Groppe

One sample/paired samples permutation t-test with correction for multiple comparisons (ttest, repeated measures, paired sample)

[pval, t_orig, crit_t, est_alpha, seed_state]=mult_comp_p...

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updated 2 years ago

Two-stage Benjamini, Krieger, & Yekutieli FDR procedure by David Groppe

Two-stage procedure for controlling the false discovery rate in a family of hypothesis tests (false discovery rate, fdr, multiple comparisons)

[h crit_p]=fdr_bky(p_values,q,report)

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updated almost 4 years ago

Estimating a smooth precision-recall curve by Kay H. Brodersen

A set of MATLAB functions for computing a smooth approximation to the precision-recall curve. (statistics, binary classification, classification perfor...)

prc_conthist(x, binWidth, color, linewidth)

prc_generate_dvs(n, alpha, muN, sigmaN, muP, sigmaP)

prc_stats(alpha, muN, sigmaN, muP, sigmaP, nPoints)

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