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updated 3 hours ago

Slicebox by Karl Sjöstrand

Microservice for safe sharing and easy access to medical images. (image analysis, image processing, dicom)

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updated 9 days ago

Medical Image Reader and Viewer by Josh Schaefferkoetter

A toolbox to handle reading, viewing, and writing dicom images, supporting simultaneous PET/MR (ct, dicom, gui)

examples

GaussianSmooth3D(vol, FWHM)

VolumeViewer3D(varargin)

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updated 15 days ago

iSignal.m by Tom O'Haver

Tom O'Haver (view profile)

Interactive smoothing, differentiation, power spectra, and measurement of time-series signals. (signal processing, data import, chemistry)

isignal(datamatrix,xcenter,xrange,sm,sw,em,dm,rm,s1,s2,sr...

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updated 20 days ago

bbrister/SIFT3D by Blaine Rister

3D SIFT keypoints and feature descriptors, image registration, and I/O for DICOM, NIFTI. (image processing, signal processing, 3d)

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updated 1 month ago

bbrister/SIFT3D-installers by Blaine Rister

3D SIFT keypoints and feature descriptors (image processing, signal processing, 3d)

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updated 1 month ago

Three parameters logistic regression - There and back again by Giuseppe Cardillo

Fit data points with a three points logistic regression or interpolate data. (statistics, chemistry, pharmaceutical)

L3P(x,y,varargin)

L3Pinv(cf,y)

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updated 2 months ago

dicomfolder(varargin) by Dylan

Dylan (view profile)

Reads all dicom files in a directory and returns one or more 3D images and corresponding metadata. (ct, mri, medical)

dicomfolder(varargin)

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updated 3 months ago

ReadPhilipsScanPhysLog(filename, channels, skipprep) by Paul Groot

ReadPhilipsScanPhysLog.m reads Philips scanphyslog files, which are created by Philips MRI scanners. (mri, philips, physiological)

ReadPhilipsScanPhysLog(filename, channels, skipprep)

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updated 3 months ago

DSP System Toolbox Support Package for ARM Cortex-A Processors by MathWorks DSP System Toolbox Team

Generate optimized DSP algorithm code for ARM Cortex-A. (arm, signal processing, communications)

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updated 4 months ago

Subsample Delay Estimation by Travis Wiens

Travis Wiens (view profile)

Demonstrates a number of methods of estimating the delay between two signals to subsample accuracy. (dsp, delay estimation, radar)

brentmin(ax,bx,cx,f,tol,itmax)

crit_interp_p(y,x)

delayest_3point(u2,u1,method,estimator,parameter)

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updated 5 months ago

MedInria .fib file import / export by Dan Golding

Import and export MedInria DTI .fib files (mri, dti, medinria)

readVTK(filename)

writeVTK(filename,data)

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updated 9 months ago

fordanic/image-registration by Daniel Forsberg

A toolbox for medical image registration. (image processing, image registration, medical)

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updated 11 months ago

Measure Myelin-to-Axon Diameter by steed huang

This Matlab example M-file is to calculate the g-ratio for Scanning Electronic Microscopy. (image processing, statistics, medical)

gRatioV1.m

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updated 1 year ago

ind2patch(IND,M,ptype) by Kevin Moerman

Kevin Moerman (view profile)

Allows plotting of patch data (slices and voxels) for 3D images for selected voxels (image, patch, 3d)

ind2patch(IND,M,ptype)

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updated 1 year ago

imoverlay by Matt Smith

Create a color overlay of two images. Allows transparency and thresholding. (overlay, medical, image processing)

imoverlay(B,F,climF,climB,cmap,alpha,haxes)

imoverlay_tool

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updated 1 year ago

Imagine by Christian Wuerslin

4D/3D image visualization and evaluation GUI. (3d, potw, pick of the week)

imagine

fLiveWireCalcP.m

fLiveWireGetPath.m

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updated 1 year ago

Medical Image Processing Toolbox by Alberto Gomez

Classes and functions for N-dimensional medical image processing, inspired by ITK (image processing, data export, data import)

PointInFrustum(p, frustum,varargin)

PointInTriangle(p, a,b,c,varargin)

PointInTriangle3D(p, a,b,c)

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updated 1 year ago

Mia 2.5 by Laszlo Balkay

Laszlo Balkay (view profile)

Medical Image Analysis GUI. (mia 24, mia, image processing)

draggable.m

writeanalyzehdr.m

pca_gui.m

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updated 1 year ago

Image Compression based on DST using Hilbert Scan by Mr. BOUREZG

A method of greyscal image compression using 2D DST transform,Hilbert scan, RLE and Huffman (image processing, medical, compression)

Binfar2Dec(code)

Dec2Binfar(Tcod8R,DIFLcdR)

Hilbert(T)

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updated 1 year ago

White blood cells detection using differential evolution (DE) by Erik

Erik (view profile)

Automatic white blood cells detector (image processing, computer vision, image analysis)

mainEllipseDetector.m

DEllipse(p1,p2,p3,p4,p5)

devec3(fname,VTR,D,XVmin,XVmax,y,NP,itermax,F,CR,strategy...

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updated 1 year ago

Hibert scan by Mr. BOUREZG

Hilbert16.m Hilbert.m Hilbertinv16.m Hilbertinv.m lena512.bmp (medical, image processing, matrix)

Hilbert(T)

Hilbert16(T)

Hilbertinv(T)

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updated 1 year ago

LDA for high dimension small sample size data by Bilwaj Gaonkar

Linear discriminant analysis when the data dimensionality is high and sample size is much smaller (medical, image analysis, signal processing)

lda_kernelized.m

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updated 1 year ago

Visualization of multi-modal volume segmentation by Pavel Dvorak

Visualize single- or multi-modal 2D or 3D images and corresponding segmentation (image processing, 3d, image)

evalSegmentation(segm,gt,roiMask)

visualize_segmentation(img,varargin)

demo_visualize_segmentation.m

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updated 1 year ago

Pseudo B-Mode Ultrasound Image Simulator by Debdoot Sheet

Debdoot Sheet (view profile)

Simulate pseudo B-mode ultrasonic images with customized tissue echogenicity maps (image processing, signal processing, medical)

fcnPseudoBmodeUltrasoundSimulator.m

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updated 1 year ago

Preclinical PKPD modeling by Peter Gennemark

Classes for fundamental PKPD modeling in drug discovery (no support for a NLME modeling). (biotech, simulation, medical)

example_fit_ev_iv()

example_fit_inf()

example_readExcel_PKPD_writePowerPoint()

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updated 1 year ago

MatrixUser v2.2 by Fang Liu

Fang Liu (view profile)

An ImageJ like, Multi-functional, GUI-based Program for Image (Matrix) Processing and Analysis (image processing, image analysis, medical)

About_MU(varargin)

MU_3D_Render(varargin)

MU_DICOM2Mat(filename,pathname,handles)

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updated 1 year ago

Graphical User Interface for Solving Ordinary Differential Equations for In-Vitro Infection by Dr. Soumya Banerjee

A graphical user interface to solve a set of ordinary differential equations (in-vitro infection) (data import, data export, gui)

odesolver_outline

odecall_eclipse_tcl_jv_local(target,infected1, ...

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updated almost 2 years ago

Wilcoxon rank-sum test and box plots for genes/compounds etc in healthy vs. disease by Dr. Soumya Banerjee

Does a Wilcoxon rank-sum test and creates box plot for genes etc in healthy vs. disease individuals (biostatistics, biotech, data import)

wilcoxon_ranksum_boxplot

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updated almost 2 years ago

t-test and box plots for genes/compounds etc in healthy vs. disease by Dr. Soumya Banerjee

Does a t-test and creates box plots for genes/compounds in healthy vs. disease individuals (statistics, biostatistics, biotech)

t_test_boxplot

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updated almost 2 years ago

healthy_disease_boxplot.zip by Dr. Soumya Banerjee

Box plots of measured quantity in healthy vs. disease in two cohorts (statistics, biostatistics, data import)

healthyvsdisease_box_plot_general

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updated almost 2 years ago

Linear regression for multiple category data with different slopes for each by Dr. Soumya Banerjee

The function does OLS and RMA regression on data that is categorized into two different categories (aerospace, biotech, communications)

regress_plot_twocategories_allslope

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updated almost 2 years ago

Information-based Similarity Toolbox by Albert Yang

Information-based similarity index is an analysis of measuring distance between symbolic sequences (statistical physics, information theory, distance)

nonrandomness.m

wrf.m

readsignal.m

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updated 2 years ago

MRiLab v1.2 by Fang Liu

Fang Liu (view profile)

A Numerical Simulation Platform for Magnetic Resonance Imaging (MRI) (medical imaging, medical, mri)

ADCRadial.m

GxSpiral.m

ADCBlock(p)

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updated 2 years ago

dicomLUT by Jered Wells

Jered Wells (view profile)

DICOMLUT applies an embedded lookup table to a DICOM image (dicom, imaging, lut)

dicomLUT(filename,varargin)

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updated 2 years ago

DICOM View by Andrew Bazyk

GUI for viewing DICOM image sets (image processing, image, dicom)

DICOM_View

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updated 2 years ago

Tools for NIfTI and ANALYZE image by Jimmy Shen

Jimmy Shen (view profile)

Load, save, make, reslice, view (and edit) both NIfTI and ANALYZE data on any platform (medical, reslice, isotropic)

affine(old_img, old_M, new_elem_size, verbose, bg, method)

bipolar(M, lo, hi, contrast)

bresenham_line3d(P1, P2, precision)

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updated 2 years ago

DSP System Toolbox Support Package for ARM Cortex-M Processors by MathWorks DSP System Toolbox Team

Generate optimized DSP algorithm code for Cortex-M. (arm, microcontroller, embedded programming)

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updated 2 years ago

Noise-Power Spectrum by Erik Fredenberg

Generate random noise with a specified noise-power spectrum (NPS) and measure the NPS of an image. (physics, medical, image processing)

calc_digital_nps(I, n, px, use_window, average_stack)

cart2rad(nps_x, f_x, n, unq)

cross_talk_noise(P, varargin)

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updated 2 years ago

Droplet Video Proccessor - code 1 of 3 by Matthew Moynihan

This code processes video of droplet production and does statistics on each droplet made. (video processing, droplets, biotech)

BWSizerA(videoBlock, dim, fStruct)

BlackOut(Image, rect, BLKrect, val)

findFilterNumA(I, rect)

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updated 2 years ago

MSKCC CGDS Cancer Genomics Toolbox by Erik Larsson

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio. (biology, genomics, medical)

cgdstutorial

getcancerstudies(cgdsURL, varargin)

getcaselists(cgdsURL, cancerTypeId, varargin)

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updated almost 3 years ago

Marching Cubes by Peter Hammer

Peter Hammer (view profile)

Use vectorized marching cubes algorithm to compute triangulated mesh of an isosurface from 3D matrix (image processing, medical, modeling)

MarchingCubes(x,y,z,c,iso,colors)

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updated almost 3 years ago

Empirical orthogonal function (PCA) estimation for EEG time series by DaveA Albers

Empirical orthogonal function (PCA) estimation for EEG time series (signal processing, statistics, data exploration)

eof_unlimited_time_return_all_EOFs.m

distinguishable_colors(n_colors,bg,func)

distinguishable_colors(n_colors,bg,func)

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updated almost 3 years ago

Glucose/Insulin modeling by DaveA Albers

Modeling of glucose/insulin dynamics (biotech, simulation, medical)

feeding(integration_iterates, I_baseline, time_steps_per_...

feeding(integration_iterates, I_baseline, time_steps_per_...

feeding(integration_iterates, I_baseline, time_steps_per_...

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updated almost 3 years ago

MIMO-Diophantine solver by davood shaghaghi

This function solve MIMO-Diophantine equation. (control design, optimization, simulation)

mimodioph(A,B,N)

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updated almost 3 years ago

differential feature by Martin Trapp

Extraction of differential features on 3D Images. (image processing, medical)

differentialFeature( img, features, stepSize )

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updated almost 3 years ago

DICOM Example Files by Jeff Mather

Jeff Mather (view profile)

Example DICOM files containing MR images of the brain. (medical, dicom, dicominfo)

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updated almost 3 years ago

Simulink Support for Kinect by Takashi Chikamasa

Simulink Support for Kinect is a set of Simulink blocks interfaced with OpenNI and Kinect SDK. (image processing, simulation, simulink)

checkBlockSingleton(model, maskType)

checkDeviceBlock(model, maskType)

checkIMAQBlock(model, blk)

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updated almost 3 years ago

HybridVel by Pratik Chhatbar

Improved blood velocity measurements with a hybrid image filtering and iterative Radon transform (red blood cells, rbc, radon transform)

hybridvel(inputimg,showimg,saveimg,delx,delt,hi,lineskip,...

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updated almost 3 years ago

Negative Binomial Regression by Surojit Biswas

NB2 Negative-Binomial regression. (statistics, mathematics, optimization)

nbreg( x, y, varargin )

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updated almost 3 years ago

eegplot by Ikaro Silva

Ikaro Silva (view profile)

Uses scattered data points to interpolate pixel values of a head image. (medical, eeg, interpolation)

eegplot(mag,ch,unorm,ch_disp,method,color_res)

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