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updated 19 days ago

mravendi/LV-segmentation-in-cardiac-MRI by M R Avendi

M R Avendi (view profile)

semi-automatic segmentation of LV in cardiac MR images (image processing, segmentation, image segmentation)

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updated 2 months ago

imtool3D by Justin Solomon

This is a image slice viewer with built in scroll, contrast, zoom and ROI tools. (image processing, medical imaging, 3d images)

imtool3D

imtool3DROI

imtool3DROI_ellipse

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updated 3 months ago

NRRD Format File Reader by David Feng

NRRD file reader (nrrd, image, data import)

nrrdread(filename)

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updated 5 months ago

Active spline model (win) by Jen Hong Tan

A new model-based segmentation. It is close to active shape model, but uses Catmull-Rom spline. (spline, active shape models, point distribution mo...)

jFlashingStr(hdl, StrContent, dur)

jFlashingStrStreamS(StringContent)

jasplmgomodel(asplm)

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updated 6 months ago

Cubehelix Colormaps: Beautiful, Distinct, Versatile! by Stephen Cobeldick

The most versatile colormap generator ever! Suitable for grayscale conversion. Maximally distinct. (colormap, color scheme, color)

cubehelix(N,start,rots,sat,gamma,yrange,domain)

cubehelix_find(map,posn,prms)

cubehelix_view(N,start,rots,sat,gamma,yrange,domain)

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updated 6 months ago

IMtoolbar by Allen newton

A self-sufficient script for adding useful tools to any figure window for viewing images (image processing, imaging, medical imaging)

IMtoolbar

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updated 6 months ago

Active spline model (mac) by Jen Hong Tan

A new model-based segmentation. It is close to active shape model, but uses Catmull-Rom spline. (computer vision, image processing, medical imaging)

jFlashingStr(hdl, StrContent, dur)

jFlashingStrStreamS(StringContent)

jasplmgomodel(asplm)

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updated 8 months ago

Maximum Intensity Projection with color coding for depth by Job

Job (view profile)

MIP-viewer, in which the color represents the depth of the voxel with the maximum intensity. (visualization, mip, maximum intensity pro...)

colorMIP(image_3D)

demonstration.m

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updated 1 year ago

CT demo v0.1 by Brendan Eck

Using image files, generate CT projection data, simulate noise, and reconstruct (ct, tomography, medical imaging)

CT_demo(varargin)

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updated 1 year ago

Active geometric shape models by Quan Wang

Quan Wang (view profile)

The active geometric shape model is a novel approach for fitting geometric shapes in images. (image processing, mathematics, optimization)

AGSM Canvas

DD=myspline(D,theta)

GI=gaussianBlur(I,s)

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updated 1 year ago

MRiLab v1.2 by Fang Liu

Fang Liu (view profile)

A Numerical Simulation Platform for Magnetic Resonance Imaging (MRI) (medical imaging, medical, mri)

ADCRadial.m

AboutMRiLab(varargin)

About_MU(varargin)

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updated 1 year ago

improj3 by Fang Liu

Fang Liu (view profile)

improj3 generates 3D projections from image stacks (image analysis, image processing, mip)

improj3(images)

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updated 1 year ago

immovie2 by Fang Liu

Fang Liu (view profile)

IMMOVIE2 make movie from multiframe superimposed images (image processing, immovie, movie)

immovie2(varargin)

example.m

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updated 1 year ago

Freehand Prostate Annotation by Guillaume Lemaitre

GUI allowing freehand annotations of DICOM prostate images (medical imaging, computer vision, dicom)

annotationTool(varargin)

xml2struct( file )

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updated almost 2 years ago

Fast and robust Nonlocal Means Denoising by Antonio Tristán Vega

Efficient implementation of the non-local means for both Rician and Gaussian noise. (mri, denoising, nonlocal means)

FastNonLocalMeans3D.m

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updated 2 years ago

Reinhard Stain Normalization by Manohar

Manohar (view profile)

This approach maps the colour distribution of an over/under stained image to that of a well stained (medical imaging, stain normalization, histology slides)

Lab2RGB(L, a, b)

RGB2Lab(R,G,B)

norm_img=stainnorm_reinhard(source,target)

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updated 2 years ago

Segmentation using morphology by Benjamin I

Segmentation of locally darker somewhat circular regions using a morphology based method (segmentation, medical imaging)

[I_segmented, recon]=reconfilt(I, thresh_val, min_rad, ma...

demo.m

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updated almost 3 years ago

vPSNR calculation by Claes Lundström

Visualization-aware image fidelity measurements (image fidelity, psnr, image processing)

vPSNR_approx.m

vPSNR_createtf(type)

vPSNR_exact.m

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updated almost 3 years ago

Interactive DICOM 3D Viewer by Eric Johnston

Viewer allows user to look through cross sections of a dicom image set. (dcm, dicom, 3d viewer)

Interactive DICOM 3D Viewer

dcm3DViewer

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updated 3 years ago

2D and 3D Symmetric Registration using CUDA by Henry Davidge

Vanilla and Symmetric Non-Rigid Registration in 2D and 3D, parallelized using CUDA (registration, image processing, medical imaging)

register2(img1,img2,rho,lambda,maxIter,varargin)

register2Symmetric(img1,img2, rho, lambda, lambda2, maxIt...

register3(img1,img2,rho,lambda,maxIter,varargin)

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updated 3 years ago

A Fast Image Segmentation using Delaunay Triangulation (Revisited) by Abbas Cheddad

Abbas Cheddad (view profile)

This is a tuned version of the old post on Delaunay-based image segmentation. (cell segmentation, clustering, delaunay triangulatio...)

DSNew.m

[Segmented Clusters]=DSIterate(Segmented,B,C,D)

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updated 3 years ago

Ray Tracing Volume Renderer by Scott Robertson

Renders a 3D volume according to a intensity indexed color map and opacity map via ray tracing. (medical imaging, image processing, volume rendering)

ParallelRayGenerator3d(volume,dimx,dimy,raystep)

volumeRenderDemo.m

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updated 3 years ago

OrthoView3D by Jered Wells

MATLAB GUI for exploring 3D datasets through a sleek and simple interface (sample dataset included) (3d, data exploration, orthographic)

orthoview3d(varargin)

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updated 3 years ago

NRRD Format File Reader by Jeff Mather

Jeff Mather (view profile)

Read imagery and metadata from .nrrd medical imaging format files. (file io, image processing, medical imaging)

nrrdread(filename)

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updated 3 years ago

Fast Continuous Max-Flow Algorithm to 2D/3D Image Segmentation by Jing Yuan

Jing Yuan (view profile)

Fast continuous max-flow algorithm to 2D/3D image segmentation developed in matlab, C and GPU (image processing, image segmentation, convex optimization)

CMF3D_Cut

CMF_Cut

test_CMF

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updated 3 years ago

Fast Continuous Max-Flow Algorithm to 2D/3D Multi-Region Image Segmentation by Jing Yuan

Jing Yuan (view profile)

It implements the fast continuous max-flow algorithm to 2D/3D multi-region image segmentation. (image processing, image segmentation, convex optimization)

CMF3D_ML_Cut

CMF_ML_Cut

test_CMF3D_ML

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updated almost 4 years ago

ct3 - A Simple Mousewheel-based 3D Image Browser for Medical Images by Tripp

Tripp (view profile)

A minimalist 3D Medical Image browser. Use the mousewheel to scroll between slices in all 3 planes. (medical imaging, 3d browser, mousewheel)

ct3(im,w)

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updated almost 4 years ago

A Fast Image Segmentation using Delaunay Triangulation by Abbas Cheddad

Abbas Cheddad (view profile)

A fully automated process that does not require initial estimate of number of clusters. (image segmentation, delaunay triangulatio..., graph cut)

DS.m

DSeg(varargin)

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updated 4 years ago

Retinal Blood Vessel Extraction by Athi

Athi (view profile)

Extracts blood vessels from a retina image using Kirsch's Templates (image processing, medical imaging, retina)

VesselExtract(inImg, threshold)

Main.m

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updated 4 years ago

Texture Feature Extraction - GLDM by Athi

Athi (view profile)

GLDM calculates the Gray level Difference Method Probability Density Functions for the given image. (image processing, medical imaging, mammogram)

GLDM(inImg, d)

SampleUsage.m

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updated 4 years ago

Matlab code for my Graduate Thesis by Troy

Troy (view profile)

Numerically solves the diffusion equations as it pertains to medical imaging. (biotech, demo, image processing)

cnfft(varargin)

cnfft2D(varargin)

cnfftneumann(varargin)

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updated 5 years ago

DICOMDIR Parser by Jadrian Miles

Automatically generates a parse tree from a DICOMDIR file, for easy non-interactive processing. (medical, medical imaging, dicom)

copySeriesFromDicomdir(src, patt, dst)

parseDicomdir(fname)

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updated 5 years ago

Active Contours: A New Distribution Metric for Image Segmentation by Romeil Sandhu

We present a new distribution metric for image segmentation for active contours. (active contours, segmentation, medical imaging)

Dirac2(x, sigma)

Init_SDF(mask)

Tryphon_NB(I, phi, iter, dt, alpha, flag_approx)

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updated 11 years ago

DICOM Viewer by Michael Wunder

Michael Wunder (view profile)

Select and preview DICOM header and images. (medical, dicom viewer image, standard)

DICOMViewer(varargin)

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