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updated 25 days ago

Microscopy Image Browser (MIB) by Ilya Belevich

MIB is a package for segmentation of multi-dimensional (2D-4D) microscopy datasets (image segmentation, image processing, visualization)

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updated 9 months ago

Intensity Gradient Removal by Ahmet Cecen

Remove unwanted intensity gradients from image. (image processing, shadow removal, gradient removal)

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updated 9 months ago

hsailem/PhenoPlot by Heba Sailem

Visualization software for high dimensional data (visualization, high content screenin..., cellular imaging)

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updated 9 months ago

Raster Image Correlation Spectroscopy by Molly Rossow

Performs raster image correlation analysis spectroscopy (RICS) (image analysis, microscopy, fluorescence)

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updated 1 year ago

Control ZEN Blue and the microscope from MATLAB by Sebastian

Control the ZEN Blue microscope control software from within a MATLAB script (image analysis, automation, microscopy)

AnalyzeSeries(image6d)

CountObjectsSimple(img, show)

DisplayObjectNumbers(numObjects, segimage, show)

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updated 1 year ago

CVXB: Image segmentation with artifacts and bias by Dominique Zosso

Region-based image segmentation model with artifacts (outliers) detection and bias correction. (image processing, image segmentation, chanvese)

CVXB( I, u, lambda, alpha, beta, gamma, rho, tau_u, tau_L...

CVXBdemo.m

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updated 1 year ago

Blobdetection for Bloodflow Estimation by Julie

Julie (view profile)

algorithm for Fluorescent microsphere detection (microsphere, blobdetection, image processing)

BlobFunct(im,plotopt)

RGBcheck(im,blobs,color)

areal_est(im)

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updated 1 year ago

Hyperspectral CARS Image Analysis by Rajeev Yadav

Hyperspectral CARS microscopy and spectroscopy toolbox (cars microscopy, microscopy, image processing)

udeconv.m

HSIStack(varargin)

ProcessStack3DMatrix(NewStack)

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updated 3 years ago

Filter noise and interpolate microscopy images in frequency domain by Shalin Mehta

Remove spatial frequencies beyond the optical cutoff and perform physically accurate interpolation. (microscopy, filtering, interpolation)

jinc(r)

opticalLowpassInterpolation(in,inscale,fcut,IntFac)

TestBench_opticalLowpassInterpolation_Airy.m

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updated 4 years ago

Vessel branch segmentation by Hiroshi Kawaguchi

Segment the vessel branches from dynamic image of fluorescent microscopy (image processing, gui, microscopy)

VBSGuiSegmantBranch(img,ph)

VBSreadtiff(directoryName,channel)

VBSregionMerge(appTimeImg)

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updated 4 years ago

Leica image format file loader by Hiroshi Kawaguchi

Read and preview of Leica's image format file. (gui, file format, microscopy)

HKloadLif.m

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updated almost 5 years ago

GUI: Radial Distribution Function by Sourav Chatterjee

Lets the user manually identify centers/dots in an input image, and calculates the RDF (measurement, statistics, image processing)

Rad_Dist_Func(varargin)

checkquad(x1,y1,rvec,dim,xlim,ylim)

rdfcalc(C,xlim,ylim)

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updated 5 years ago

FRETSCAL by Eric Muller

For the FRET analysis of images of yeast cells labeled with YFP and CFP. (microscopy, yeast, fluorescence resonanc...)

walkthru_guts.m

freaddata.m

batch

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updated 6 years ago

Live Intensity Plot by Peter

Peter (view profile)

Reads images from liveCam, measures intensity in selected region and writes data + movie to file (live intensity plot, imaga acquisition, thin films)

ThinFilms(varargin)

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updated almost 7 years ago

Image Section Generator by Alison Chaiken

Image Section Generator grabs cursor-designated linescans from microscope images (gui, image processing, microscopy)

CheckForExistingFile( OutFileName )

EnforceBounds(InputVector,InputHandles)

ImageSectionGenerator(varargin)

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