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updated 24 days ago

Intensity Gradient Removal by Ahmet Cecen

Remove unwanted intensity gradients from image. (image processing, shadow removal, gradient removal)

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updated 2 months ago

Control ZEN Blue and the microscope from MATLAB by Sebastian

Control the ZEN Blue microscope control software from within a MATLAB script (image analysis, automation, microscopy)


CountObjectsSimple(img, show)

DisplayObjectNumbers(numObjects, segimage, show)

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updated 4 months ago

hsailem/PhenoPlot by Heba Sailem

Visualization software for high dimensional data (visualization, high content screenin..., cellular imaging)

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updated 4 months ago

CVXB: Image segmentation with artifacts and bias by Dominique Zosso

Region-based image segmentation model with artifacts (outliers) detection and bias correction. (image processing, image segmentation, chanvese)

CVXB( I, u, lambda, alpha, beta, gamma, rho, tau_u, tau_L...


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updated 5 months ago

Raster Image Correlation Spectroscopy by Molly Rossow

Performs raster image correlation analysis spectroscopy (RICS) (image analysis, microscopy, fluorescence)

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updated 5 months ago

Blobdetection for Bloodflow Estimation by Julie

Julie (view profile)

algorithm for Fluorescent microsphere detection (microsphere, blobdetection, image processing)




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updated 8 months ago

Hyperspectral CARS Image Analysis by Rajeev Yadav

Hyperspectral CARS microscopy and spectroscopy toolbox (cars microscopy, microscopy, image processing)




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updated 2 years ago

Filter noise and interpolate microscopy images in frequency domain by Shalin Mehta

Remove spatial frequencies beyond the optical cutoff and perform physically accurate interpolation. (microscopy, filtering, interpolation)




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updated 3 years ago

Vessel branch segmentation by Hiroshi Kawaguchi

Segment the vessel branches from dynamic image of fluorescent microscopy (image processing, gui, microscopy)


[appTime, mask]=VBSvesselMask(vimg)

[map sepTime]=VBSregionMerge(appTimeImg)

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updated 3 years ago

Leica image format file loader by Hiroshi Kawaguchi

Read and preview of Leica's image format file. (gui, file format, microscopy)


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updated 4 years ago

GUI: Radial Distribution Function by Sourav Chatterjee

Lets the user manually identify centers/dots in an input image, and calculates the RDF (measurement, statistics, image processing)




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updated 4 years ago

FRETSCAL by Eric Muller

For the FRET analysis of images of yeast cells labeled with YFP and CFP. (microscopy, yeast, fluorescence resonanc...)




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updated 5 years ago

Live Intensity Plot by Peter

Peter (view profile)

Reads images from liveCam, measures intensity in selected region and writes data + movie to file (live intensity plot, imaga acquisition, thin films)


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updated almost 6 years ago

Image Section Generator by Alison Chaiken

Image Section Generator grabs cursor-designated linescans from microscope images (gui, image processing, microscopy)

CheckForExistingFile( OutFileName )



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