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updated 2 months ago

Sequence Assembly App by Turner Conrad

Assemble overlapping sequences according to reference (pcr, sanger, sequence)

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updated 3 months ago

Amino acid conservation.zip by Guangdi Li

Analysis of amino acid conservation using conservation index (conservationstatistic..., amino acid, conservation)

AAConservationIndex( Seq,SimilarityMatrix,AASymbol )

AnalysisInterSequenceDiversity( GenomeSeqA,GenomeSeqB, Ga...

AnalysisIntraSequenceDiversity( GenomeSeq, GagpCutoff )

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updated 5 months ago

Movie from a Sequence of Images in a folder by laksono

This function makes a simple avi movie from all image files in a folder (image, movie, sequence)

images_seq_to_video( output_name,images_dir,img_format, f...

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updated 5 months ago

Whole Genome Resequencing Pipeline v2.0 by Turner Conrad

Automated mapping and indel realignment of resequencing data (whole genome sequenci..., sequence, sequencing)

WGRSPipeline(reads_file,ref_file)

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updated 11 months ago

FINDSEQ by Oleg Komarov

Find sequences of repeated (adjacent/consecutive) numeric values. NaNs and Infs are supported. (sequence, repeated, consecutive)

findseq(A,dim)

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updated 2 years ago

The Fibonacci Sequence by John D'Errico

Efficient computation of Fibonacci and Lucas numbers (fibonacci, lucas, numbers)

fibonacciEvolution

fibonacci(n,modulus)

fibrecur(N)

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updated 2 years ago

Aperiodic array generation by ben payne

Functions to create aperiodic 1D, 2D arrays from Thue-Morse, Fibonacci, Rudin-Shapiro algorithms (aperiodic, thuemorse, thue)

convert_1D_binary_to_2D_array(sequenc)

convert_2D_array_to_coordinates(sourceGrid,scatr_const)

generate_1D_baumSweet_array(generation,seed)

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updated almost 3 years ago

find sequences by Maxim Vedenyov

Finds sequences of repeated elements in array (find, sequence, array)

[i1a i2a]=find_sequences(b,n)

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updated 3 years ago

Modeling, Simulation and 3D Animation of a Simple Assembly Line by Simulink Dude

A simple template that combines SimEvents, Stateflow, Simulink and Simulink 3D Animation. (simevents, 3d, animation)

assembly_line

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updated 3 years ago

Create avifile from frames. by H├ęctor Corte

This code is for create an avifile from frames. (image processing, application, images)

Movie_from_frames.m

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updated 3 years ago

Kautz sequence generator by W. Owen Brimijoin

Generates example Kautz sequences of specified number of characters and subsequence lengths. (sequences, kautz sequence, de bruijn sequence)

kautz_generator(num_chars,subsequence_length)

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updated 3 years ago

2D Progressive Vector Diagram by Isaac Mancero Mosquera

Sequential Vector plot. Vector components x, y are required. User can define the initial position. (vector, sequence, progressive vector di...)

ipvd(vx,vy,xo,yo)

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updated almost 4 years ago

Figure to play and analyze videos with custom plots on top by Joao Henriques

A figure ready to scroll through and play videos. You can also draw any custom graphics on it. (figure, video analysis, video processing)

videofig.m

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updated almost 4 years ago

Motif Finding by Michael Chan

Illustrates Combinatorial and Viterbi-akin motif finding. (bioinformatics, probabilistic, combinatorics)

PWM( alignmentSetMatrix )

computeNewPWM_GivenSeqBasedOnPWM (alignmentSetMatrix, mot...

computeProbabilityOfSubsequence(sequenceToBeChecked, prob...

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updated almost 4 years ago

Compute Position Weight Matrix (PWM) and display SequenceLogo in terms of frequency by Michael Chan

Illustrates computation of best match scoring with PWM and constructs sequence logo. (bioinformatics, position weight matri..., match)

PWM( alignmentSetMatrix )

change1colorOnRGBToAnother(rgbImage, FromColor, ToColor)

computeProbabilityOfSubsequence(sequenceToBeChecked, prob...

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updated almost 4 years ago

Burrows-Wheeler Matrix (BWM) Transform by Michael Chan

Illustrates the Burrows-Wheeler Matrix (BWM) Transform. (bioinformatics, string, sort)

BWT (shortGeneStr)

cell2str(c,n,mode)

cell2string( cellString )

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updated almost 4 years ago

Suffix Array by Michael Chan

The objective is to illustrate suffix array computation. This does not include the search operation. (bioinformatics, string, sort)

determineSuffixArray( stringTarget )

usage_determineSuffixArray.m

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updated almost 4 years ago

Hermite polynomials by Avan Suinesiaputra

Generate Hermite polynomials Hn(x) where n is the polynomial order. (hermite, polynomial, sequence)

hermite(n,x)

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updated 4 years ago

WWW.RANDOM.ORG random integers/sequences/strings by Oleg Komarov

Get true random integers, sequences or strings (rand, integer, randi)

randorg(n, range, varargin)

seqorg(range, varargin)

strorg(n, len, varargin)

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updated 4 years ago

Gibbs Motif Sampler by Brad Ridder

Finds motifs and the optimum width via Gibbs sampling. No toolboxes required. (gibbs, sampling, markov)

gibbsmotifsampler(seqArray,motifVector,alphabet,Options)

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updated 5 years ago

Brain Teaser Solver by Rodolphe Sitter

Brain Teaser Solver: Compute the expected time to get a given sequence of independent outcomes. (sequence, outcome, dice)

OutcomeSequence(Sequence, N_Outcomes)

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updated 5 years ago

Eigenshuffle by John D'Errico

Consistently sorted eigenvalue and eigenvector sequences (eigenvalues, eig, order)

eigenshuffle(Asequence)

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updated 6 years ago

geospace by Edward Zechmann

This program outputs a geometric sequence of n-numbers from a to b. (geometric sequence, geometric series, sequence)

[m2]=geospace(a, b, n, flag)

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updated almost 7 years ago

Fibonacci Number Generator by Jesse

This is a program that generates any desired amount of fibonacci numbers. (fibonacci, numbers, sequence)

[f]=fibonacci(n)

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updated 7 years ago

Generate a Faure sequence by Dimitri Shvorob

(perhaps while learning QMC) (integration, faure monte carlo, qmc)

faure(k,d,b)

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updated almost 8 years ago

Sequence Diagram tool by Eric Ludlam

Create UML style Sequence Diagrams (specialized, plotting, sequence)

sequencediagramdemo

createnode(nodename, linkidx, loop)

makelink(linkname, linkidx, lastnodeidx, nodeidx)

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updated almost 9 years ago

Collatz by Matt Fig

Tools for examining the Collatz sequence. (collatz, sequence, tools)

[]=collatzrange(n,d)

collatz(n)

collatz=collatzbackwardward(n,cnt)

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updated 9 years ago

Movie from a Sequence of Images by Nassim Khaled

Creates an avi movie from a sequence of images. (application, movie, sequence)

Movie_from_frames(name,filetype,number_of_frames,display_...

MOVIES.avi

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updated 10 years ago

Movie sequence by Olivier Salvado

Build a movie sequence and generate a avi file (data exploration, movie, camera)

CamSeqGUI(varargin)

CamSeqGen(cam,fps,method);

CamSeqPlay(seq,fps,filename);

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updated 12 years ago

mls.m by Christopher Brown

Generates maximum length sequences, which are pseudorandom noises useful for acoustic measurements. (sound, maximum, length)

mls(n,flag)

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