image thumbnail

updated 10 months ago

Gillespie Stochastic Simulation Algorithm by Nezar

Nezar (view profile)

Simulate discrete stochastic models of chemical reaction networks. (simulation, modeling, chemistry)

image thumbnail

updated 11 months ago

App Builder for SimBiology Models by Asawari Samant

Asawari Samant (view profile)

Tool to automate the process of creating standalone, model-exploration apps for SimBiology model (simbiology, pkpd, systems biology)

buildApp(inputSet, compileFlag)

createSlider(f, pNum, pInfo)

createUI(model, appName)

image thumbnail

updated 12 months ago

CNM by Gregorio Alanis-Lobato

A Matlab toolbox for the construction of artificial complex networks (complex networks, network science, systems biology)

angular_dist(XI, XJ)



image thumbnail

updated 2 years ago

Renin-Angiotensin-System (RAS) model for SimBiology by Sven Mesecke

Provides a SimBiology model implementation of the Renin-Angiotensin-System (simbiology, pkpd, systems biology)

image thumbnail

updated 2 years ago

Convert SimBiology(R) model to COBRA Toolbox model by Sven Mesecke

Use SimBiology for dynamic modeling and COBRA Toolbox algorithms for constraint-based modeling. (simbiology, simbiology export, systems biology)


image thumbnail

updated 2 years ago

BerkeleyMadonna model import function for SimBiology by Sven Mesecke

Imports ODE models in the BerkeleyMadonna(TM) format into a SimBiology(R) model (simbiology, simbiology import, systems biology)


image thumbnail

updated 7 years ago

Systems Biology Tool Box ODE Generator by Ilya Chorny

Utility to generate ODEs from and xml file generated by sbiodesktop (biotech, pharmaceutical, ode)

Contact us