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updated 10 months ago

Gillespie Stochastic Simulation Algorithm by Nezar

Nezar (view profile)

Simulate discrete stochastic models of chemical reaction networks. (simulation, modeling, chemistry)

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updated 11 months ago

App Builder for SimBiology Models by Asawari Samant

Asawari Samant (view profile)

Tool to automate the process of creating standalone, model-exploration apps for SimBiology model (simbiology, pkpd, systems biology)

buildApp(inputSet, compileFlag)

createSlider(f, pNum, pInfo)

createUI(model, appName)

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updated 12 months ago

CNM by Gregorio Alanis-Lobato

A Matlab toolbox for the construction of artificial complex networks (complex networks, network science, systems biology)

angular_dist(XI, XJ)

avgClusteringCoefficient(graph)

ba_net.m

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updated 2 years ago

Renin-Angiotensin-System (RAS) model for SimBiology by Sven Mesecke

Provides a SimBiology model implementation of the Renin-Angiotensin-System (simbiology, pkpd, systems biology)

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updated 2 years ago

Convert SimBiology(R) model to COBRA Toolbox model by Sven Mesecke

Use SimBiology for dynamic modeling and COBRA Toolbox algorithms for constraint-based modeling. (simbiology, simbiology export, systems biology)

sbioexportCobra(simbioModel,varargin)

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updated 2 years ago

BerkeleyMadonna model import function for SimBiology by Sven Mesecke

Imports ODE models in the BerkeleyMadonna(TM) format into a SimBiology(R) model (simbiology, simbiology import, systems biology)

sbioimportBerkeleyMadonna.m

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updated 7 years ago

Systems Biology Tool Box ODE Generator by Ilya Chorny

Utility to generate ODEs from and xml file generated by sbiodesktop (biotech, pharmaceutical, ode)

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