Omer Demirkaya

Daniel good work.
I have a suggestion about an efficient mean and standard deviation calculations within your while loop.

Here is the inintilization of the parameters outside the loop.

meanI = regVal; % Mean intensity
sumSQR = 0; % sum of squares
stdI = 0; % Standard deviation
N = 1; % number of pixels

And then within your while loop after the statement,

J(xv+i, yv+j, zv+k) = true;

one can add the following lines of code to progessively calculate mean and standard deviation
gI = cIM(xv+i, yv+j, zv+k);
sumSQR = sumSQR + gI*gI;
meanI = (N*meanI + gI)/(N+1); % update mean
N = N+1; % increment number of pixels
stdI = (sumSQR - N*meanI*meanI)/(N-1); % update standard deviation

Omer.

I am getting two types of errors with two different cases...But I think that the software is nice and helpful. pls let me know a way out of this....

??? Error using ==> imlook3d('readOrdinaryImageSeries_Callback',gcbo,[],guidata(gcbo))
Error using ==> imread at 328
Unable to determine the file format.

??? Error using ==> imlook3d('readSingleDicomImage_Callback',gcbo,[],guidata(gcbo))
Undefined function or method 'keepfield' for input arguments of type 'struct'.

??? Error while evaluating uimenu Callback

Also, pls mention some steps to run the software.

I have slices of images I am trying to use this code to help view. I have the files saved with incrementing filenames and I load them all and place them in a cell. I tried to run the program by typing "imlook3d(Cellname)" but get an error about the min and max of a cell not being able to be computed. I also cannot get imwrite to save my cell, it gives the same error: Undefined function or method 'min' for input arguments of type 'cell'.

Could my data be in an incorrect format, or am I using this function incorrectly? If so, what is the correct method?

I hope this is the appropriate place to ask this question. Any thoughts would be greatly appreciated.