Works very well, I am using it to generate a batch of files from a single template. I am replacing two strings in a template and creating a file everytime. Is there a way to replace multiple strings in one shot?
The way I do it now is:
1. Open template, replace first string, save with new name.
2. Open new file, replace second string.
first of all thanks sharing code
i want to ask a question
i have dwi brain image .gipl format.i want to tick on .gipl image with roi and then want to make logic one in roi area and logic zero outside of roi area
if someone knows how it is done, kindly help me
Thanks for the toolbox. I have following issue:
I have a 3D matrix in MATLAB which I need to convert to NIfTI or ANALYZE format so as to view it in SPM8. For this I am using "Tools for NIfTI and ANALYZE image". My problem is once I convert this 3D matrix to ANALYZE format using make_ana command, I get the brain volume that is rotated/flipped w.r.t the original volume.
How can I resolve this?
NOTE: co-registering this to original brain volume did not help, the result was still flipped.
Thank you so much for this very helpful code!
I encountered a problem with loading some of my files.
I prepared a mask file in FSL, and want to load it into matlab together with some functional files.
The problem is the affine matrix has non-orthogonal rotation for 2 of my subjects, so I cannot use "load_nii".
I am not sure if I can use "reslice_nii" because I still need this mask file to have the same dimensions as my functional file.
Any ideas would be much appreciated!
24 Oct 2014
Segmentation by growing a region from seed point using intensity mean measure