Mark Mikofski

FYI:
All commands that deal with remotes and that require authentication, EG: CLONE, FETCH, PULL, PUSH, will *only* work
* with SSH
* with *no* passphrase
* with keys in the openSSH format
* with keys and known hosts in $HOME\.ssh

Obviously remotes that do not require authentication will work fine. EG: public, read-only and local repositories.

SSH is very easy to set up.
1. Download puttygen (Intel x86) from this site:
http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
Disregard the "Intel x86" business, it doesn't matter what processor you have or whether your os is 64-bit or 32-bit. Puttygen is a very mature well establish application that is used by many other applications, for example all of the TortoiseXXX scm clients use Putty, Plink and Pageant
This is the actual download here: (click to download then click to install)
http://the.earth.li/~sgtatham/putty/latest/x86/puttygen.exe
2. create a folder called .ssh in your %USERPROFILE%. On Windows 7 this is
C:\Users\<your account name>
and on xp it is
C:\Documents and Settings\<your account name>
You can do this in matlab.
>> mkdir(fullfile(getenv('userprofile'), '.ssh'))
3. create a key using puttygen, this is fairly self explantory, and kind of fun, but do *not* set a passphrase; leave those fields blank!
4. using puttygen, find the conversion menu tab and export the key in the openSSH format to the .ssh folder you created earlier.
5. now copy and paste your public key to your remote repositories (Github, Bitbucket, etc.) as needed. Jsch, which is the ssh client that JGit uses should now work out of the box.

Unfortunately using https isn't possible with JGit4MATLAB. Sorry. but hopefully you'll love the excitement of using ssh key pairs!

John, Sorry for my slow response. You can accomplish this the same way I zeroed out the last coefficient.

E.g. to force the 1st order coefficient to zero do the following:

% ...
x = x(:);
y = y(:);

% since you want might want to include the constant term,
% change "z" to be a matrix of ones, and make it one column wider
% to include the 0th-order term

% z = zeros(dim,degree); % comment out this line which doesn't include constant
z = ones(dim,degree+1); % add this line which now includes 0th-order term

for n = 1:degree
z(:,n) = x.^(degree-n+1);
end

% you don't have to calculate the constant term,
% because it will be a column of ones (i.e. x^0 = 1)
% now remove any columns that you don't want to fit
% e.g. we want to force the 1st order coefficient to zero
orderOfZeroCoeffs = 1; % a vector of terms to omit from regression, e.g. [1,0],
% you could make "orderOfZeroCoeffs" an input to the function

% now, remove the terms whose coeffs you want to zero
orderOfNonZeroCoeffs= ~ismember(degree:-1:0, orderOfZeroCoeffs);
z = z(:,orderOfNonZeroCoeffs); % replace z with the columns removed
% there are a 1000 other ways to write this code!

% comment out the following lines
% because now it's more complicated
% pZero = z\y;
% pZero = [pZero;0]';

% instead create a vector of zeros
% any terms not calculated are already set to zero
pZero = zeros(1,degree+1);
% substitute the coefficients directly into "pZero" by index assignment
pZero(orderOfNonZeroCoeffs) = z\y;

% ...

Try that out. I'm curious what you're using this for. Also check out the other polyfit0 (fex272) function that Jennifer Sanders found above. You can modify it in exactly the same way I show here, but you will also have to modify the other output parameters.

Thank you Q. Fang for this excellent program. As an alternative anyone could just use the org.json files directly from java. they are here:
https://github.com/douglascrockford/JSON-java
and directions are here:
http://www.json.org/java/index.html
You need to compile them or just export them to a jar file which requires jdk. I have compiled it already for you here:
http://dl.dropbox.com/u/19049582/JSON.jar
Before you can use the org.json library you have to add to your java class path (either dynamic or static) by following the directions here:
http://www.mathworks.com/help/techdoc/matlab_external/f4863.html
For example: javaaddpath('full-path\JSON.jar') will add the jar file to your dynamic path.
Then you can use java which is native to MATLAB to use the org.json library.
For example:
jsonObj = org.json.JSONObject('{myKey:myVal}')

John, Sorry for my slow response. You can accomplish this the same way I zeroed out the last coefficient.

E.g. to force the 1st order coefficient to zero do the following:

% ...
x = x(:);
y = y(:);

% since you want might want to include the constant term,
% change "z" to be a matrix of ones, and make it one column wider
% to include the 0th-order term

% z = zeros(dim,degree); % comment out this line which doesn't include constant
z = ones(dim,degree+1); % add this line which now includes 0th-order term

for n = 1:degree
z(:,n) = x.^(degree-n+1);
end

% you don't have to calculate the constant term,
% because it will be a column of ones (i.e. x^0 = 1)
% now remove any columns that you don't want to fit
% e.g. we want to force the 1st order coefficient to zero
orderOfZeroCoeffs = 1; % a vector of terms to omit from regression, e.g. [1,0],
% you could make "orderOfZeroCoeffs" an input to the function

% now, remove the terms whose coeffs you want to zero
orderOfNonZeroCoeffs= ~ismember(degree:-1:0, orderOfZeroCoeffs);
z = z(:,orderOfNonZeroCoeffs); % replace z with the columns removed
% there are a 1000 other ways to write this code!

% comment out the following lines
% because now it's more complicated
% pZero = z\y;
% pZero = [pZero;0]';

% instead create a vector of zeros
% any terms not calculated are already set to zero
pZero = zeros(1,degree+1);
% substitute the coefficients directly into "pZero" by index assignment
pZero(orderOfNonZeroCoeffs) = z\y;

% ...

Try that out. I'm curious what you're using this for. Also check out the other polyfit0 (fex272) function that Jennifer Sanders found above. You can modify it in exactly the same way I show here, but you will also have to modify the other output parameters.