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boyexex

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University of Illinois at Urbana Champaign

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Files Posted by boyexex View all
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13 Nov 2012 Modified gradient for gpuArray's Slightly modified the gradient function of MATLAB that is usable for gpuArray. Author: boyexex image processing, signal processing, mathematics, data exploration, matrix 5 0
25 Oct 2012 Screenshot 3D image stack viewer Current version only accept gray-scale images. Just format your image stack into a 3D array. Author: boyexex image processing, biotech, demo, gui, 3d images, data representation 30 0
22 Oct 2012 Multi-dimensional (N-dimensional) Gaussian and gaussian derivative filters Parameters: number of dimension (D) filter size (fsize) SD of Gaussian (sigma) Author: boyexex image processing, mathematics, signal processing, statistics, biotech 7 0
27 Sep 2012 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex edge detection, 3d, canny edge, image processing 24 4
  • 2.0
2.0 | 2 ratings
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16 May 2013 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex

Re CH:
line 21 of the nonmax_sup.m file should be:
imtemp = interp3(x,y,z,imfil_mag,xi,yi,zi);
rather than":
imtemp = interp3(imfil_mag,xi,yi,zi);

In addition, the input volume data of the canny3D function has to be a 3D array.
30 Sep 2012 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex

parameters of this function is simple.

im_out = canny3D(im_in, size_of_gaussian_filter, SD_of_gaussian_filter, upper_threshold, lower_threshold)

im_out is a logical 3D array of surfaces; 1 for surface, 0 otherwise.

For the definition of upper_threshold and lower_threshold please check the original paper on Canny edge detection by John Canny.
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16 May 2013 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex boyexex

Re CH:
line 21 of the nonmax_sup.m file should be:
imtemp = interp3(x,y,z,imfil_mag,xi,yi,zi);
rather than":
imtemp = interp3(imfil_mag,xi,yi,zi);

In addition, the input volume data of the canny3D function has to be a 3D array.
23 Apr 2013 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex King, JR

Same error as CH for me.
21 Feb 2013 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex Hatt, Chuck

Didn't work for me, but looks promising

edgevol = canny3D(double(vol),5,2,.3,.1);
??? Subscript indices must either be real positive integers or logicals.

Error in ==> interp3>linear at 374
F = (( arg4(ndx).*(1-t) + arg4(ndx+1).*t ).*(1-s) + ...

Error in ==> interp3 at 223
vi = linear(x,y,z,v,xi,yi,zi,ExtrapVal);

Error in ==> nonmax_sup at 21
imtemp = interp3(imfil_mag,xi,yi,zi);

Error in ==> canny3D at 28
im_sub = nonmax_sup(imfil_x,imfil_y,imfil_z,th_up, th_low);

30 Sep 2012 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex boyexex

parameters of this function is simple.

im_out = canny3D(im_in, size_of_gaussian_filter, SD_of_gaussian_filter, upper_threshold, lower_threshold)

im_out is a logical 3D array of surfaces; 1 for surface, 0 otherwise.

For the definition of upper_threshold and lower_threshold please check the original paper on Canny edge detection by John Canny.
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image processing, biotech, mathematics, signal processing, 3d
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Updated   File Tags Downloads
(last 30 days) 		Comments Rating
13 Nov 2012 Modified gradient for gpuArray's Slightly modified the gradient function of MATLAB that is usable for gpuArray. Author: boyexex image processing, signal processing, mathematics, data exploration, matrix 5 0
25 Oct 2012 Screenshot 3D image stack viewer Current version only accept gray-scale images. Just format your image stack into a 3D array. Author: boyexex image processing, biotech, demo, gui, 3d images, data representation 30 0
22 Oct 2012 Multi-dimensional (N-dimensional) Gaussian and gaussian derivative filters Parameters: number of dimension (D) filter size (fsize) SD of Gaussian (sigma) Author: boyexex image processing, mathematics, signal processing, statistics, biotech 7 0
27 Sep 2012 Three dimensional implementation of the Canny edge detection Can be used to detected surfaces from a 3D volume. Author: boyexex edge detection, 3d, canny edge, image processing 24 4
  • 2.0
2.0 | 2 ratings

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