Rank: 3032 based on 19 downloads (last 30 days) and 2 files submitted
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Sachin Nikumbh

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The MathWorks

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Files Posted by Sachin View all
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(last 30 days) 		Comments Rating
01 Nov 2010 Black-Scholes Option Value Web Application - Java/Tomcat This example code demonstrates how to access Java components generated by MATLAB Builder for Java fr Author: Sachin Nikumbh finance, modeling, analysis, java tomcat builder f... 14 0
05 Feb 2002 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh biotech, pharmaceutical, protein data bank, pdb, rcsb, bioinformatics 5 6
  • 4.4
4.4 | 5 ratings
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15 Jun 2011 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh Guerin, Laurent

There is a small bug in the code.
On line 341, replace :
if CurRes ~= PrevRes
by
if ~strcmp(CurRes,PrevRes)
30 Apr 2008 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh Araujo, Celso

I ger almost the same error as the last poster, under matlab 7.4.0 and linux:

>> p = PDBRead('PDBSilk.txt');
Extracting the information............
??? Subscript indices must either be real positive integers or logicals.
Error in ==> PDBRead at 348
PDB_struct.SEQRES.ResChainDetail(PDB_struct.SEQRES.NoOfResChain).AminoAcids = strcat(PDB_struct.SEQRES.ResChainDetail(PDB_struct.SEQRES.NoOfResChain).AminoAcids,GetAminoAcids(
16 Jan 2008 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh Mukhopadhyay, Rishi

Possibly its an issue specific to my setup (Kubuntu linux, matlab 7), but when I run the program on the included PDBSilk.txt file, I get an error message:
??? Cell contents indices must be greater than 0.

Error in ==> PDBRead at 348
PDB_struct.SEQRES.ResChainDetail(PDB_struct.SEQRES.NoOfResChain).AminoAcids = strcat(PDB_struct.SEQRES.ResChainDetail(PDB_struct.SEQRES.NoOfResChain).AminoAcids,GetAminoAcids(
06 Aug 2006 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh rao, ashiwn

excellent
30 Jul 2005 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh Lange, Oliver

Syntax Error when i try to read a pdb-file:
Reference to non-existent field 'REMARK'
Top Tags Applied by Sachin
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analysis, bioinformatics, biotech, finance, java tomcat builder for java web
Files Tagged by Sachin View all
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Updated   File Tags Downloads
(last 30 days) 		Comments Rating
01 Nov 2010 Black-Scholes Option Value Web Application - Java/Tomcat This example code demonstrates how to access Java components generated by MATLAB Builder for Java fr Author: Sachin Nikumbh finance, modeling, analysis, java tomcat builder f... 14 0
05 Feb 2002 PDBRead Read a PDB file into a MATLAB structure. Author: Sachin Nikumbh biotech, pharmaceutical, protein data bank, pdb, rcsb, bioinformatics 5 6
  • 4.4
4.4 | 5 ratings

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