Rank: 1752 based on 85 downloads (last 30 days) and 2 files submitted
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Nitai Steinberg

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Weizmann Institute of Science

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Files Posted by Nitai View all
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04 Nov 2013 Screenshot A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg gui, plate, reader, platereader, od, fluorescence 28 1
11 Sep 2012 Screenshot Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg gui, flow cytometry, facs 57 4
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Comments and Ratings by Nitai View all
Updated File Comments Rating
24 Nov 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg

Dear Joakim Sandstedt,
Thank you for your comment, I am happy you use this software and like it.
About the error message you encounter, it looks like it relates to the "GUI Layout Toolbox" I used to build this GUI (http://www.mathworks.com/matlabcentral/fileexchange/27758-gui-layout-toolbox).
I don't know what cause this specific error, but if I have to guess, it might be related to the Matlab version that you use.
Do you encounter problems in changing the window size? or is it just this error that appears in the beginning and that's it?
If you want you can address the people that wrote the toolbox and describe what you experience. I am sorry but I am not familiar with their code, I just used it, so I can't help you more than this...
In any case I hope you can still work with this software, and please tell me about any other problem you encounter, and I hope I could be more helpful :)
Good luck,
Nitai

24 Sep 2013 A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg

Please stay tuned for updates (suppose to be uploaded the next few days...)

02 Apr 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg

Hi Nicole,
Thank you very much for the feedback, it is very important to me.
About the issues you raised:
- I also have Windows machine, and I didn't experienced these problems. I used "\" and not "/" as far as I noticed... (at least in 'private\rorchach.mat' I used "\" and I tried to look for "/" in the file and saw it only in divisions). But please tell me if I am mistaken.
- As for the implementation of the logicle display, I need help, I am not sure I know how to do it efficiently.
- I didn't experience the issue with the little log scale tick marks in 2D plots... If you could tell me exactly which settings you used, or even send me a screenshot it would be helpful.
- About multiple plot of the same file using different X and Y axes for each plot, there is no such option for now. I need to think about it, another person raised a similar issue regarding the multiple plots. I created it for my own use, but I understand that there are many things I didn't think about. Maybe I could try to change it in future version...
Thanks again for your feedback!
Nitai

Comments and Ratings on Nitai's Files View all
Updated File Comment by Comments Rating
24 Nov 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg Steinberg, Nitai

Dear Joakim Sandstedt,
Thank you for your comment, I am happy you use this software and like it.
About the error message you encounter, it looks like it relates to the "GUI Layout Toolbox" I used to build this GUI (http://www.mathworks.com/matlabcentral/fileexchange/27758-gui-layout-toolbox).
I don't know what cause this specific error, but if I have to guess, it might be related to the Matlab version that you use.
Do you encounter problems in changing the window size? or is it just this error that appears in the beginning and that's it?
If you want you can address the people that wrote the toolbox and describe what you experience. I am sorry but I am not familiar with their code, I just used it, so I can't help you more than this...
In any case I hope you can still work with this software, and please tell me about any other problem you encounter, and I hope I could be more helpful :)
Good luck,
Nitai

21 Nov 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg Sandstedt, Joakim

Dear Nitai Steinberg!

Thank you for an excellent application for analysis of FACS data which I also plan to use for quantification of immunocytochemistry data obtained from CellProfiler. I'm quite new to the Matlab script language, but I noticed when I started the program the following error message:
"
Error using set
Values must be finite and non-NaN

Error in uiextras.Container/repositionChild (line 376)
set( child, propname, position );

Error in uiextras.VBox/redraw (line 88)
obj.repositionChild( child, newPosition );

Error in uiextras.Container/onResized (line 326)
obj.redraw();

Error in uiextras.Container>@(varargin)obj.onResized(varargin{:}) (line 90)
obj.Listeners{end+1,1} = handle.listener( containerObj, findprop(
containerObj, 'PixelBounds' ), 'PropertyPostSet', @obj.onResized );
"

The application seems to be working correctly, so this might not be anything of importance. Thanks again for a very nice application.

Kind regards

Joakim Sandstedt M.D., PhD student

Department of Clinical Chemistry and Transfusion Medicine,
Institute of Biomedicine, The Sahlgrenska Academy

24 Sep 2013 A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg Steinberg, Nitai

Please stay tuned for updates (suppose to be uploaded the next few days...)

02 Apr 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg Steinberg, Nitai

Hi Nicole,
Thank you very much for the feedback, it is very important to me.
About the issues you raised:
- I also have Windows machine, and I didn't experienced these problems. I used "\" and not "/" as far as I noticed... (at least in 'private\rorchach.mat' I used "\" and I tried to look for "/" in the file and saw it only in divisions). But please tell me if I am mistaken.
- As for the implementation of the logicle display, I need help, I am not sure I know how to do it efficiently.
- I didn't experience the issue with the little log scale tick marks in 2D plots... If you could tell me exactly which settings you used, or even send me a screenshot it would be helpful.
- About multiple plot of the same file using different X and Y axes for each plot, there is no such option for now. I need to think about it, another person raised a similar issue regarding the multiple plots. I created it for my own use, but I understand that there are many things I didn't think about. Maybe I could try to change it in future version...
Thanks again for your feedback!
Nitai

27 Mar 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg Nicole

This is an excellent flow cytometry toolkit/gui for matlab. What I like most about this plug-in is the fact that I don't have to be a matlab master to use it. I hope you continue to develop it since it has a lot of potential.

Bugs:
- There are some path issues in using this plugin on a Windows installation of matlab involving \ vs /. Once repaired, the software works as advertised. (I fixed it awhile ago on my copy, so I fear I've forgotten which files are affected. But at the very least, do a search for "private/rorschach.mat" in FCGUImain.m and change to "private\rorschach.mat" if you have a Windows machine. I seem to remember at least one other file needs a similarly trivial change.)

Feature Requests:
- As you said in "open issues," implementing a logicile/biexponential display would be very beneficial.
- When I try to make a multiple plot figure of 2D histograms, and set them to have the same x/y scale (i.e. 1:1), the little log scale tick marks don't follow suit. I end up deleting them by hand.
- While I can clearly see how to make a multiple plot of several different files, using the same dyes for their x and y axes, I don't see how to make a multiplot of the same file using different dyes for the x and y axes.

Thank you for your hard work on this plug in.

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