Rank: 1944 based on 60 downloads (last 30 days) and 2 files submitted
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Nitai Steinberg

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Weizmann Institute of Science

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10 Jul 2014 Screenshot A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg gui, plate, reader, platereader, od, fluorescence 25 3
  • 5.0
5.0 | 1 rating
11 Sep 2012 Screenshot Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg gui, flow cytometry, facs 35 4
  • 5.0
5.0 | 1 rating
Comments and Ratings by Nitai View all
Updated File Comments Rating
24 Nov 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg

Dear Joakim Sandstedt,
Thank you for your comment, I am happy you use this software and like it.
About the error message you encounter, it looks like it relates to the "GUI Layout Toolbox" I used to build this GUI (http://www.mathworks.com/matlabcentral/fileexchange/27758-gui-layout-toolbox).
I don't know what cause this specific error, but if I have to guess, it might be related to the Matlab version that you use.
Do you encounter problems in changing the window size? or is it just this error that appears in the beginning and that's it?
If you want you can address the people that wrote the toolbox and describe what you experience. I am sorry but I am not familiar with their code, I just used it, so I can't help you more than this...
In any case I hope you can still work with this software, and please tell me about any other problem you encounter, and I hope I could be more helpful :)
Good luck,
Nitai

24 Sep 2013 A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg

Please stay tuned for updates (suppose to be uploaded the next few days...)

02 Apr 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg

Hi Nicole,
Thank you very much for the feedback, it is very important to me.
About the issues you raised:
- I also have Windows machine, and I didn't experienced these problems. I used "\" and not "/" as far as I noticed... (at least in 'private\rorchach.mat' I used "\" and I tried to look for "/" in the file and saw it only in divisions). But please tell me if I am mistaken.
- As for the implementation of the logicle display, I need help, I am not sure I know how to do it efficiently.
- I didn't experience the issue with the little log scale tick marks in 2D plots... If you could tell me exactly which settings you used, or even send me a screenshot it would be helpful.
- About multiple plot of the same file using different X and Y axes for each plot, there is no such option for now. I need to think about it, another person raised a similar issue regarding the multiple plots. I created it for my own use, but I understand that there are many things I didn't think about. Maybe I could try to change it in future version...
Thanks again for your feedback!
Nitai

Comments and Ratings on Nitai's Files View all
Updated File Comment by Comments Rating
12 Aug 2014 A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg Jan

great implementation, have been looking for something like this.
I am running growth curve analysis pretty frequently myself. Wishlist that would a lot of yeast people happy is:

1) integrated area under the curve (AUC) calculation by either trapezoid or Simpson's Rule method

2) variance or s.d. calculation of AUC using delta method, described in Gagnon and Peterson (1998)

04 Jul 2014 A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg Ackermann, Refael

Beautiful

24 Nov 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg Steinberg, Nitai

Dear Joakim Sandstedt,
Thank you for your comment, I am happy you use this software and like it.
About the error message you encounter, it looks like it relates to the "GUI Layout Toolbox" I used to build this GUI (http://www.mathworks.com/matlabcentral/fileexchange/27758-gui-layout-toolbox).
I don't know what cause this specific error, but if I have to guess, it might be related to the Matlab version that you use.
Do you encounter problems in changing the window size? or is it just this error that appears in the beginning and that's it?
If you want you can address the people that wrote the toolbox and describe what you experience. I am sorry but I am not familiar with their code, I just used it, so I can't help you more than this...
In any case I hope you can still work with this software, and please tell me about any other problem you encounter, and I hope I could be more helpful :)
Good luck,
Nitai

21 Nov 2013 Flow Cytometry GUI for Matlab This GUI was built in order to make Flow Cytometry data analyses in Matlab – gating, statistics etc. Author: Nitai Steinberg Sandstedt, Joakim

Dear Nitai Steinberg!

Thank you for an excellent application for analysis of FACS data which I also plan to use for quantification of immunocytochemistry data obtained from CellProfiler. I'm quite new to the Matlab script language, but I noticed when I started the program the following error message:
"
Error using set
Values must be finite and non-NaN

Error in uiextras.Container/repositionChild (line 376)
set( child, propname, position );

Error in uiextras.VBox/redraw (line 88)
obj.repositionChild( child, newPosition );

Error in uiextras.Container/onResized (line 326)
obj.redraw();

Error in uiextras.Container>@(varargin)obj.onResized(varargin{:}) (line 90)
obj.Listeners{end+1,1} = handle.listener( containerObj, findprop(
containerObj, 'PixelBounds' ), 'PropertyPostSet', @obj.onResized );
"

The application seems to be working correctly, so this might not be anything of importance. Thanks again for a very nice application.

Kind regards

Joakim Sandstedt M.D., PhD student

Department of Clinical Chemistry and Transfusion Medicine,
Institute of Biomedicine, The Sahlgrenska Academy

24 Sep 2013 A GUI for plate reader growth curve analyses A GUI for the analysis of plate reader growth curve results. Author: Nitai Steinberg Steinberg, Nitai

Please stay tuned for updates (suppose to be uploaded the next few days...)

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