Rank: 135 based on 441 downloads (last 30 days) and 13 files submitted
photo

Jean-Yves Tinevez

E-mail
Company/University
Institut Pasteur

Personal Profile:
Professional Interests:
signal processing, image processing, biology, imaging

 

Watch this Author's files

 

Files Posted by Jean-Yves View all
Updated   File Tags Downloads
(last 30 days)
Comments Rating
08 Mar 2013 Screenshot Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez measurement, simulation, statistics, physics, image processing 73 0
  • 5.0
5.0 | 1 rating
21 Feb 2013 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez drawing, center, image processing, circle 26 1
  • 4.0
4.0 | 1 rating
25 Jan 2013 Screenshot Rolling statistics Convenience utility made to compute descriptive statistics without storing data. Author: Jean-Yves Tinevez signal processing, image processing, data exploration, statistics, demo, measurement 13 0
20 Aug 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez image processing, tracking, particle linking 78 5
  • 4.6
4.6 | 6 ratings
13 Apr 2012 Screenshot Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez tree, data structure, graph, matlab, tutorial, oop 154 11
  • 4.875
4.9 | 9 ratings
Comments and Ratings by Jean-Yves View all
Updated File Comments Rating
18 Jan 2013 Expectation Maximization 1D Tracking Demo Demos use of expectation maximization algorithm to solve simplified one dimensional tracking problem Author: Andrew Stachyra

27 Oct 2012 Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez

@kittu: hi Kittu. Could you contact me per email? I am not sure I understood your bug report, and would like to fix it.
Best
jy

12 Sep 2012 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

@Skirt: Thanks! Unfortunately this class cannot do what you want. What you describe here is a simple graph, of which this tree is just a specialization (this is actually an even more specialized *rooted tree* in a tree, all nodes but the root have exactly one parent, and edges have a direction).

You can make a tree out of a simple undirected graph (simple pick one particular node, and name it "the root"), but I think that you could beneficiate from a proper data structure class for what you want.

There exist some basis on which you could build in MATLAB, using e.g. the adjacency matrix (used in gplot http://www.mathworks.fr/fr/help/matlab/ref/gplot.html) which is an unspecialized sparse matrix.

Best
jy

07 Sep 2012 distance2curve Find the closest point on a (n-dimensional) curve to any given point or set of points Author: John D'Errico

Thanks John. I tested with interparc and managed to produce correct curves. I also understood that the discrepancies were due to me using the cumulative interchordal length instead of the proper arc length along the target interpolated curve.
Thanks again
jy

06 Sep 2012 distance2curve Find the closest point on a (n-dimensional) curve to any given point or set of points Author: John D'Errico

Hi John,
Again a great submission in a flawless catalogue.
I just have a side question: How would I do to get the interpolated curve we measure the distance to in your contribution? My attempts to approach the implicit curve we compute the distance to here have failed (see fex #22948).
Best
jy

Comments and Ratings on Jean-Yves' Files View all
Updated File Comment by Comments Rating
23 Apr 2013 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Harish Chandra

09 Apr 2013 Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez Juan

It works well, thanks for uploading

09 Apr 2013 Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez suissa

28 Feb 2013 Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez Shimoni, Raz

21 Jan 2013 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez Goley, Steve

Excellent implementation of the tree data structure. I really like the automatic plotting function although it gets a bit crowded for large trees.

Top Tags Applied by Jean-Yves
image processing, measurement, optimization, plotting, specialized
Files Tagged by Jean-Yves View all
Updated   File Tags Downloads
(last 30 days)
Comments Rating
08 Mar 2013 Screenshot Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez measurement, simulation, statistics, physics, image processing 73 0
  • 5.0
5.0 | 1 rating
21 Feb 2013 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez drawing, center, image processing, circle 26 1
  • 4.0
4.0 | 1 rating
25 Jan 2013 Screenshot Rolling statistics Convenience utility made to compute descriptive statistics without storing data. Author: Jean-Yves Tinevez signal processing, image processing, data exploration, statistics, demo, measurement 13 0
20 Aug 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez image processing, tracking, particle linking 78 5
  • 4.6
4.6 | 6 ratings
13 Apr 2012 Screenshot Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez tree, data structure, graph, matlab, tutorial, oop 154 11
  • 4.875
4.9 | 9 ratings

Contact us