Rank: 198 based on 428 downloads (last 30 days) and 10 files submitted
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Jean-Yves Tinevez

E-mail
Company/University
Institut Pasteur
Lat/Long
48.84045, 2.311

Personal Profile:
Professional Interests:
signal processing, image processing, biology, imaging

 

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Files Posted by Jean-Yves View all
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(last 30 days)
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10 Jul 2014 Screenshot Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez matlab, data structure, tree, graph, tutorial, oop 108 38
  • 4.85714
4.9 | 17 ratings
08 Jul 2014 Screenshot Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez measurement, simulation, statistics, physics, image processing 76 13
  • 5.0
5.0 | 7 ratings
21 Feb 2013 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez image processing, drawing, center, circle 33 2
  • 4.5
4.5 | 2 ratings
25 Jan 2013 Screenshot Rolling statistics Convenience utility made to compute descriptive statistics without storing data. Author: Jean-Yves Tinevez signal processing, image processing, data exploration, statistics, demo, measurement 15 0
20 Aug 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez tracking, image processing, particle linking 56 9
  • 4.71429
4.7 | 8 ratings
Comments and Ratings by Jean-Yves View all
Updated File Comments Rating
16 Jul 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez

Hi @Florent
It seems like an installation problem.
What does the 'which msdanalyzer' command says?
What does 'help msdanalyzer' says?

04 Jul 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

Hi @Muhammad.
Indeed, to compare the equality between two matrices, we would need the isequal method to be implemented.
This is not the case for @tree right now; I will do it for the next release.
In the meantime, you would have to do something like
>> cellfun(@(x) isequal(x, a), t.Node )

23 Jun 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

Thanks!

19 Jun 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

Hi @Muhammad.
Yes! It's in the doc:
http://tinevez.github.io/jyt-matlab/publish/html/TreeDemo/TreeDemo_traversal.html#8

02 Jun 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

Hi @kan,

Indeed, you need to have at least MATLAB 2008a to use the @tree class. It is based on the new class definition that MATLAB shipped starting from this version.
Best
jy

Comments and Ratings on Jean-Yves' Files View all
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23 Jul 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Sustar, Vid

Hi!

When using msdanalyser with xml file from trackmate I get a message:
Computing MSD of 44 tracks... 1/ 44Error using -
Matrix dimensions must agree.

Error in msdanalyzer/computeMSD (line 487)
delta = dr2 - mean_msd(index_in_all_delays);

How could this problem be solved?

Best regards,

Vid Sustar

17 Jul 2014 Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez Dzinza, Lucia

hi Jean,

May you please assist me. I am tracking particles and l tried running the code on test script for simple tracker function, when l ran the programme, it asked me to define tracks, l defined it like this:
tracks=SIMPLETRACKER(points);
then it asked me to define SIMPLETRACKER. How do l define it?

16 Jul 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Tinevez, Jean-Yves

Hi @Florent
It seems like an installation problem.
What does the 'which msdanalyzer' command says?
What does 'help msdanalyzer' says?

15 Jul 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez SPAGNI, Florent

Hi Jean-Yves,
I have a problem with a class type with your matlab files especially for the addall "ma = ma.addAll(tracks);".
I have this error message printed on the terminal: "No appropriate method, property, or field addAll for class msdanalyzer.".
Did you have this message in the past or have a solution to make it work?
Looking forward to reading to you very soon.
Best regards
Florent

04 Jul 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez Zaman, Muhammad Aneeq uz

Hi Jean-Yves, thanks that was very helpful. Btw is your implementation going to be more efficient than isequal because currently its taking a big chunk of my computation. If its faster it would save a lot of time for me.

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