Rank: 254 based on 383 downloads (last 30 days) and 10 files submitted
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Jean-Yves Tinevez

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Institut Pasteur
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Files Posted by Jean-Yves Tinevez View all
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(last 30 days)
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10 Jul 2014 Screenshot Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez matlab, data structure, tree, graph, tutorial, oop 130 44
  • 4.875
4.9 | 19 ratings
08 Jul 2014 Screenshot Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez measurement, simulation, statistics, physics, image processing 60 27
  • 5.0
5.0 | 10 ratings
21 Feb 2013 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez image processing, drawing, center, circle 24 2
  • 4.5
4.5 | 2 ratings
25 Jan 2013 Screenshot Rolling statistics Convenience utility made to compute descriptive statistics without storing data. Author: Jean-Yves Tinevez signal processing, image processing, data exploration, statistics, demo, measurement 8 0
20 Aug 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez tracking, image processing, particle linking, target tracking 57 9
  • 4.75
4.8 | 9 ratings
Comments and Ratings by Jean-Yves Tinevez View all
Updated File Comments Rating
03 Dec 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez

Hi @Renjie
It looks like an installation problem. MSDanalyzer is shipped as a class, so you need to install it as a class. Check that the folder containing @msdanalyzer is in the path, but not the @msdanalyzer folder itself.
Tell me if it works.

18 Nov 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez

Hi @Javad
It's always the same bug. Just check my comment below on its origin and how to fix it.
Best
jy

07 Nov 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

Hi @Thomas,
Thank you very much for the positive feedback.
As for your suggestion, I shall contact you via email to start the discussion on the technical side. But just a remark: Your construct is very elegant and it is a good idea to implement it. However, note that it depends on the iteration order of sibling nodes, which is not what you can expect from the plots.

10 Oct 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez

Hi @Liam, and thanks for the feedback.
What you mention here resembles a known bug. If the frame interval of the movie you want to analyze is defined over too many digits (something like 0.18374531289123648392716 seconds), the class gets confused when binning intervals together, which ultimately triggers the error you got.
Could you please check what is the frame interval in your case? Cropping it to a few digits should solve the problem.
Best
jy

27 Sep 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

Hi @Muhammad.
In theory nothing prevents you from concatenating all the methods file in the class main file, inside a 'methods' block. Except that it would make the code completely unreadable and unmaintainable. I did this mistake once for another contribution (the msdanalyzer) and won't do it again.
Best
jy

Comments and Ratings on Jean-Yves Tinevez's Files View all
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18 Dec 2014 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez Grigory

find() doesn't work in case tree has empty [] elements.

11 Dec 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Renjie

Hi Jean-Yves,
now it is ok, Thank you for your help, and this code is very useful.

Kind regards,
Renjie

03 Dec 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Jean-Yves Tinevez

Hi @Renjie
It looks like an installation problem. MSDanalyzer is shipped as a class, so you need to install it as a class. Check that the folder containing @msdanalyzer is in the path, but not the @msdanalyzer folder itself.
Tell me if it works.

01 Dec 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Renjie

01 Dec 2014 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Renjie

Hi Jean-Yves,

First I need to say it is a very useful program, thank you for your sharing. However, following the tutorial, the first step is error, when I input mc=msdanalyzer(2,'μm','s'); the matlab will say there is no function for 'private'. Did you find this situation? can you help me for this?

Thank you so much for your help.

Kind regards,

Renjie

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