Rank: 262 based on 232 downloads (last 30 days) and 11 files submitted
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Jean-Yves Tinevez

E-mail
Company/University
Institut Pasteur

Personal Profile:
Professional Interests:
signal processing, image processing, biology, imaging

 

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Files Posted by Jean-Yves View all
  • 1 - 5 of
  • 11
Updated   File Tags Downloads
(last 30 days) 		Comments Rating
30 Jan 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez tracking, image processing, particle linking 94 0
  • 5.0
5.0 | 1 rating
28 Nov 2011 Screenshot Nearest-neighbor linker Link two lists of points based on nearest neighbor. Author: Jean-Yves Tinevez tracking, optimization, image processing 23 0
28 Nov 2011 Screenshot Hungarian based particle linking Find best links between two sets of points based on their euclidean distance, using Hungarian algo Author: Jean-Yves Tinevez optimization, image processing, assignment problem 10 0
20 Nov 2011 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez drawing, center, image processing, circle 18 0
13 Aug 2011 Screenshot Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez 3d, image processing, image visualization, gui 37 11
  • 5.0
5.0 | 1 rating
Comments and Ratings by Jean-Yves View all
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  • 8
Updated File Comments Rating
09 Dec 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez

@Shalin: Hi Shalin! Could you contact me off-list so that we can try to fix this? This is a rather obscure error, at least to me. Best, jy.
06 Nov 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez

@Ran: I think I found the problem.
Could you update Fiji, make sure scripts/Miji.m is listed in the update, relaunch Fiji (mandatory), then try again?
Thanks.
05 Nov 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez

@Ran: Hi, could you contact me via e-mail so that we sort this out?
Thanks!
10 Aug 2011 Import ImageJ ROIs Read ROIs and ROI sets saved from ImageJ into MATLAB, without java. Author: Dylan Muir

Does what it says, and does it right. The function is well documented and cover all ROI types well.
There is just a minor warning coming from line 157, because of the capitalized FILESEP...
10 Aug 2011 Import ImageJ ROIs Read ROIs and ROI sets saved from ImageJ into MATLAB, without java. Author: Dylan Muir
Comments and Ratings on Jean-Yves' Files View all
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Updated File Comment by Comments Rating
09 Dec 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez Tinevez, Jean-Yves

@Shalin: Hi Shalin! Could you contact me off-list so that we can try to fix this? This is a rather obscure error, at least to me. Best, jy.
08 Dec 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez Mehta, Shalin

Hello, Nice work. I am running into problems with MATLAB R2011b on MAC OS Lion (Java VM Version: Java 1.6.0_29-b11-402-11M3527 with Apple Inc. Java HotSpot(TM) 64-Bit Server VM mixed mode) .

When I try to execute universe.show() from the first demonstration, I encounter following error. It looks like a permission related issue, but I cannot figure out how to resolve this.
----------------------------------------

Error using ij3d.Image3DUniverse/show
Java exception occurred:
java.lang.SecurityException: sealing violation: package javax.media.j3d is sealed
at java.net.URLClassLoader.defineClass(URLClassLoader.java:234)
at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at com.mathworks.jmi.CustomURLClassLoader.findClass(ClassLoaderManager.java:754)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClassCond(ClassLoader.java:631)
at java.lang.ClassLoader.defineClass(ClassLoader.java:615)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at com.mathworks.jmi.CustomURLClassLoader.findClass(ClassLoaderManager.java:754)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
at ij3d.ImageWindow3D.<init>(ImageWindow3D.java:64)
at ij3d.Image3DUniverse.show(Image3DUniverse.java:195)
02 Dec 2011 Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez Paris, Sebastien
06 Nov 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez Ran

Looks like you fixed it!
Thanks a lot!
Here comes your 5-stars rating...

Ran
06 Nov 2011 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez Tinevez, Jean-Yves

@Ran: I think I found the problem.
Could you update Fiji, make sure scripts/Miji.m is listed in the update, relaunch Fiji (mandatory), then try again?
Thanks.
Top Tags Applied by Jean-Yves
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  • 37
image processing, optimization, plotting, specialized, tracking
Files Tagged by Jean-Yves View all
  • 1 - 5 of
  • 11
Updated   File Tags Downloads
(last 30 days) 		Comments Rating
30 Jan 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez tracking, image processing, particle linking 94 0
  • 5.0
5.0 | 1 rating
28 Nov 2011 Screenshot Nearest-neighbor linker Link two lists of points based on nearest neighbor. Author: Jean-Yves Tinevez tracking, optimization, image processing 23 0
28 Nov 2011 Screenshot Hungarian based particle linking Find best links between two sets of points based on their euclidean distance, using Hungarian algo Author: Jean-Yves Tinevez optimization, image processing, assignment problem 10 0
20 Nov 2011 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez drawing, center, image processing, circle 18 0
13 Aug 2011 Screenshot Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez 3d, image processing, image visualization, gui 37 11
  • 5.0
5.0 | 1 rating

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