Rank: 177 based on 275 downloads (last 30 days) and 11 files submitted
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Jean-Yves Tinevez

E-mail
Company/University
Institut Pasteur
Lat/Long
48.84045, 2.311

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Professional Interests:
signal processing, image processing, biology, imaging

 

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Files Posted by Jean-Yves View all
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(last 30 days)
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08 Mar 2013 Screenshot Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez measurement, simulation, statistics, physics, image processing 50 1
  • 5.0
5.0 | 3 ratings
21 Feb 2013 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez drawing, center, image processing, circle 15 1
  • 4.0
4.0 | 1 rating
25 Jan 2013 Screenshot Rolling statistics Convenience utility made to compute descriptive statistics without storing data. Author: Jean-Yves Tinevez signal processing, image processing, data exploration, statistics, demo, measurement 8 0
20 Aug 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez image processing, tracking, particle linking 45 5
  • 4.6
4.6 | 6 ratings
13 Apr 2012 Screenshot Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez data structure, tree, graph, matlab, tutorial, oop 101 13
  • 4.88889
4.9 | 10 ratings
Comments and Ratings by Jean-Yves View all
Updated File Comments Rating
29 Jul 2013 Generate maximally perceptually-distinct colors Choose a set of n colors that can be readily distinguished from each other Author: Tim Holy

Hi Tim.
How does your submission relate to Glasbey LUT?
http://fiji.sc/Glasbey and
Glasbey, Chris, et al. "Colour displays for categorical images." Color Research & Application 32.4 (2007): 304-309.

10 Jul 2013 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

@Scott: Hi,
This is a good idea, I'll put it in next release.
I also need to integrate Per Isakson contribution.

18 Jan 2013 Expectation Maximization 1D Tracking Demo Demos use of expectation maximization algorithm to solve simplified one dimensional tracking problem Author: Andrew Stachyra

27 Oct 2012 Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez

@kittu: hi Kittu. Could you contact me per email? I am not sure I understood your bug report, and would like to fix it.
Best
jy

12 Sep 2012 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez

@Skirt: Thanks! Unfortunately this class cannot do what you want. What you describe here is a simple graph, of which this tree is just a specialization (this is actually an even more specialized *rooted tree* in a tree, all nodes but the root have exactly one parent, and edges have a direction).

You can make a tree out of a simple undirected graph (simple pick one particular node, and name it "the root"), but I think that you could beneficiate from a proper data structure class for what you want.

There exist some basis on which you could build in MATLAB, using e.g. the adjacency matrix (used in gplot http://www.mathworks.fr/fr/help/matlab/ref/gplot.html) which is an unspecialized sparse matrix.

Best
jy

Comments and Ratings on Jean-Yves' Files View all
Updated File Comment by Comments Rating
17 Jul 2013 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Pete

10 Jul 2013 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez Tinevez, Jean-Yves

@Scott: Hi,
This is a good idea, I'll put it in next release.
I also need to integrate Per Isakson contribution.

10 Jul 2013 Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez Teuscher, Scott

Can the construction of the trees be vectorized? for example I have an ordered vector X which has the parent of each node and I could create a tree by t=tree(X).

18 Jun 2013 Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez Baker, Matt

Great documentation. Standalone it is a very useful tutorial for understanding MSD computation, but additionally is very functional for diffusion coefficient computation across myriad situations.

30 May 2013 Hardware accelerated 3D viewer for MATLAB A set of demonstrations that show how to install and use an accelerated 3D viewer for MATLAB. Author: Jean-Yves Tinevez Utzinger, Urs

While the export of data from Matlab to 3D Viewer is well documented the path backward is difficult to figure out.

1) I have not figured out how to import a rendered scene as an image.

2) In the 3D Viewer one can change the view with the mouse but I have not figured out how to get the actual 3D transformation matrix back to Matlab.

3) While one can zoom with the Mouse scroll button, there appears to be no such function available to control the viewer from Matlab. A workaround is to compute the 3D transformation matrix for objects in Matlab but I could only make that work for objects and not for the view of the Universe.

Comment) The Transformation Matrix in Java3d is not the usual Rotation*Scaling*Translation. Translation is appended as 4th column.

Top Tags Applied by Jean-Yves
image processing, measurement, optimization, statistics, tracking
Files Tagged by Jean-Yves View all
Updated   File Tags Downloads
(last 30 days)
Comments Rating
08 Mar 2013 Screenshot Mean square displacement analysis of particles trajectories A MATLAB class for the mean square displacement analysis of particle trajectories, with a tutorial. Author: Jean-Yves Tinevez measurement, simulation, statistics, physics, image processing 50 1
  • 5.0
5.0 | 3 ratings
21 Feb 2013 Screenshot Circle pixel coordinates using mid-point algorithm Return the optimal pixel coordinates of a circle, given its center and radius. Author: Jean-Yves Tinevez drawing, center, image processing, circle 15 1
  • 4.0
4.0 | 1 rating
25 Jan 2013 Screenshot Rolling statistics Convenience utility made to compute descriptive statistics without storing data. Author: Jean-Yves Tinevez signal processing, image processing, data exploration, statistics, demo, measurement 8 0
20 Aug 2012 Screenshot Simple Tracker Simple multiple particle tracker with gap closing. Author: Jean-Yves Tinevez image processing, tracking, particle linking 45 5
  • 4.6
4.6 | 6 ratings
13 Apr 2012 Screenshot Tree data structure as a MATLAB class A per-value class that implements a generic tree data structure. Author: Jean-Yves Tinevez data structure, tree, graph, matlab, tutorial, oop 101 13
  • 4.88889
4.9 | 10 ratings

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