Thanks for nice application!
However, I have some problems with parsing of files in a class subfolder. In my project I have defined a class in a separate folder, with class methods defined in separate files in that folder. When I run MatlabDocMaker.create, I notice that only the class definition file is parsed properly. For the other files only the function name and link to the class is shown in the documentation. Comments and LaTEX commands are ignored. If I move the same file to a location outside this class folder, it is parsed normally. I cannot figure out what I have done wrong.