Thanks for the toolbox. I have following issue:
I have a 3D matrix in MATLAB which I need to convert to NIfTI or ANALYZE format so as to view it in SPM8. For this I am using "Tools for NIfTI and ANALYZE image". My problem is once I convert this 3D matrix to ANALYZE format using make_ana command, I get the brain volume that is rotated/flipped w.r.t the original volume.
How can I resolve this?
NOTE: co-registering this to original brain volume did not help, the result was still flipped.