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24 Dec 2014 Isocontour Find ISO-contour geometry in a 2D image using marching-squares, and sort the contour objects Author: Dirk-Jan Kroon Feten

Hi,
Could you please explain to me the aim of the two function implemented in the isocontour function.
For exemple matrices I, E, IE. What are representing?

23 Dec 2014 ffts(X,V,Xq,method,window) Fast Fourier Transform ( FFT ) of scattered data Author: Dirk-Jan Kroon Marc

Awesome function.

22 Dec 2014 Kinect Matlab Microsoft Kinect, OpenNI wrapper, Skeleton, Depth Author: Dirk-Jan Kroon Sinan kececi

I have also this problem. Is there a solution for this?
Error using mex
mxNiChangeDepthViewPoint.cpp
C:\Users\Sinan\Desktop\KINECT\OpenNI1\Mex\mxNiChangeDepthViewPoint.cpp(3) : fatal error C1083: Cannot open include file:
'XnOpenNI.h': No such file or directory

Error in compile_cpp_files (line 49)
mex('-v',['-L' OpenNiPathLib],'-lopenNI64',['-I' OpenNiPathInclude ''],Filename);

19 Dec 2014 Smooth Triangulated Mesh Accurate smoothing of triangulated patch / mesh Author: Dirk-Jan Kroon Ali

I get this error: Undefined function 'smoothpatch_curvature_double' for input arguments of type 'cell'. (Windows 7, ver 2014b). The .c file is path.

16 Dec 2014 Accurate Fast Marching Multistencils second order Fast Marching 2D and 3D including rk4 shortest path and skeletonize Author: Dirk-Jan Kroon William

Cannot run skeletization in 3D as msfm3d.m not a function resulting in the following error:

Attempt to execute SCRIPT msfm3d as a function:
C:\Users\Will\Desktop\Matlab Tools\functions\msfm3d.m

Error in msfm (line 105)
T=msfm3d(F, SourcePoints, UseSecond, UseCross);

Error in skeleton>getBoundaryDistance (line 201)
BoundaryDistance = msfm(SpeedImage, SourcePoint, false, true);

Error in skeleton (line 66)
BoundaryDistance=getBoundaryDistance(I,IS3D);

Please advise, many thanks

15 Dec 2014 Basic PCA based log-Likelihood Classifier PCA algorithm suitable for detection / recognition of 2D image "objects" Author: Dirk-Jan Kroon Samer Shorman

Important work

15 Dec 2014 Viola Jones Object Detection Viola Jones Object detection using OpenCV trained classifiers Author: Dirk-Jan Kroon amani Aljefri

please I need help>>what is the input for options?..I am new to malab

11 Dec 2014 Patch Curvature Principal, Gaussian and Mean Curvature of triangulated mesh Author: Dirk-Jan Kroon Marta

Great!

11 Dec 2014 Snake : Active Contour Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) Author: Dirk-Jan Kroon Sanya

I tried the code (22 lines, as it is, without editing) mentioned under "Example, Basic:" in "Snake2D.m". This is the error I am getting:

To use 'interp', you might need:
interp - Control System Toolbox
interp - Signal Processing Toolbox
interp - System Identification Toolbox

Error in InterpolateContourPoints2D (line 32)
O(:,1)=interp([P(end-3:end,1);P(:,1);P(:,1);P(1:4,1)],10);

Error in Snake2D (line 127)
P=InterpolateContourPoints2D(P,Options.nPoints);

Your File Information says only Image Processing Toolbox is required to use your submitted code.

Is there anything I am doing wrong? I just want to detect contour of an example image I have in:
http://stackoverflow.com/questions/27418314/extract-co-ordinates-from-detected-contour

Any comments will be appreciated.

Regards.

10 Dec 2014 Kinect Matlab Microsoft Kinect, OpenNI wrapper, Skeleton, Depth Author: Dirk-Jan Kroon Juan Terven

Hi, Is it possible to get the depth image registered with the RGB image (or viceversa)?

10 Dec 2014 Viewer3D MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI Author: Dirk-Jan Kroon RÜZGAR YANIK

first of all thanks sharing code

i want to ask a question

i have dwi brain image .gipl format.i want to tick on .gipl image with roi and then want to make logic one in roi area and logic zero outside of roi area

if someone knows how it is done, kindly help me

waiting feedback

thanks

09 Dec 2014 DTI and Fiber Tracking Diffusion MRI (DTI), calculates FA, ADC, Vector Field, and will track and visualize neural tracts. Author: Dirk-Jan Kroon RÜZGAR YANIK

firstly thanks share this code with us

i have a problem in part of code

FT(FA,VectorF,Roi,parameters) in FT.m

How we take "Roi Parameter" in different image

if someone knows, kindly help me about this topic

05 Dec 2014 Triangular Mesh Refinement This function will refine a triangular mesh with 4-split spline interpolation Author: Dirk-Jan Kroon Marta

Great work yet again, Dirk!

04 Dec 2014 structfind Search for a value, cell or string inside a Matlab struct Author: Dirk-Jan Kroon Chad Greene

This function has proven quite helpful; thanks for sharing.

03 Dec 2014 Classic AdaBoost Classifier Weak threshold classifier boosted to strong Classifier with Adaboost Author: Dirk-Jan Kroon ankit dixit

Nice work dude, keep it up :-)

28 Nov 2014 Accurate Fast Marching Multistencils second order Fast Marching 2D and 3D including rk4 shortest path and skeletonize Author: Dirk-Jan Kroon jianbo

Some compiling notes for clang (mac):

change 'inline' to 'static inline' before compiling with mex

21 Nov 2014 Senz3D Acquisition interface Creative Senz3D, Intel Interactive Gesture Camera (Time of Flight), Acquisition interface. Author: Dirk-Jan Kroon Dirk-Jan Kroon

Note, latest SDK can be downloaden from:
http://registrationcenter-download.intel.com/akdlm/irc_nas/3706/intel_pc_sdk_websetup_1.7.12492.0.exe

21 Nov 2014 Read Medical Data 3D GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats Author: Dirk-Jan Kroon Arne

okey - sorry I looked at the examples; it works fine with .mhd files. Great job!

21 Nov 2014 Read Medical Data 3D GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats Author: Dirk-Jan Kroon Arne

This tool would be super useful for me. I have 3D mhd-files I want to read into matlab. Ultimately, I want to print out the X,Y,Z-positions of the points.
But first I need to read the mhd's in.. yet Im totally new to MatLab and I don't know where to specify the files I want to read in.. Can someone help.. I guess I only need to copy paste the filename somewhere..

21 Nov 2014 Active Shape Model (ASM) and Active Appearance Model (AAM) Cootes 2D/3D Active Shape & Appearance Model for automatic image object segmentation and recognition Author: Dirk-Jan Kroon zhixiang

Hi!
There are somethings wrong about the results.Can you tell me how to promote the code?Thank you!

14 Nov 2014 Triangular Mesh Refinement This function will refine a triangular mesh with 4-split spline interpolation Author: Dirk-Jan Kroon Reynaldo

Dear Dirk-Jan, this code has worked for some .ply files I am using, but there are a handful which are not working in your refinepatch method.

Are there certain criteria that must be met for this to work on a given triangulation?

Specifically I am using Sumner's camel-reference.obj file from the folder "camel poses from Figure 1"
http://people.csail.mit.edu/sumner/research/deftransfer/data.html#download.

The mex file throws an error which causes Matlab to exit. Has anyone else ran into this problem? Maybe the file does not have a certain necessary property for the method? Thanks

-Rey

11 Nov 2014 Hessian based Frangi Vesselness filter Enhancement of Vessel/ridge like structures in 2D/3D image using hessian eigen values Author: Dirk-Jan Kroon Asmat khan

Dear Sir,
Please send me the work that you implemented.
As you mentioned
see pp. 45

11 Nov 2014 Accurate Fast Marching Multistencils second order Fast Marching 2D and 3D including rk4 shortest path and skeletonize Author: Dirk-Jan Kroon Nidhin

Hi Dirk,

Thanks a lot for sharing your code! One thing though, quite basic stuff I am afraid, but hopefully you can help: I cannot compile rk4, I get the error below.

Any help will be more than welcomed!

Pablo
Building with 'Xcode with Clang'.
Error using mex
Undefined symbols for architecture x86_64:
"_interpgrad3d", referenced from:
_RK4STEP_3D in rk4.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)

Error in compile_c_files (line 12)
mex('rk4.c');

11 Nov 2014 Viola Jones Object Detection Viola Jones Object detection using OpenCV trained classifiers Author: Dirk-Jan Kroon Jia Zhen

Sir, when i try to run ConvertHaarcasadeXMLOpenCV(filename) i keep getting this error
Maximum recursion limit of 500 reached. Use set(0,'RecursionLimit',N) to change the limit. Be aware
that exceeding your available stack space can crash MATLAB and/or your computer.

Error in ConvertHaarcasadeXMLOpenCV

what should i do to solve the problem? thanks

06 Nov 2014 Accurate Fast Marching Multistencils second order Fast Marching 2D and 3D including rk4 shortest path and skeletonize Author: Dirk-Jan Kroon Lowell Liu

Seems to have error for constant speed field tracking.

SpeedImage=ones(1000,1000)*0+1500;
SourcePoint=[800;400];
DistanceMap= msfm(SpeedImage, SourcePoint);
figure, imshow(DistanceMap,[0 3400])
StartPoint=[100;100];
ShortestLine=shortestpath(DistanceMap,StartPoint,SourcePoint);
hold on, plot(ShortestLine(:,2),ShortestLine(:,1),'r')

27 Oct 2014 Read Medical Data 3D GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats Author: Dirk-Jan Kroon omar

thanks

26 Oct 2014 Patch Curvature Principal, Gaussian and Mean Curvature of triangulated mesh Author: Dirk-Jan Kroon Leo

Dear author, Thank you for this work.

However, I have a problem about this code. I am not quite understand the meanning of:
k = rand(1,3)
in the VectorRotationMatrix.
It will be very kind of you, if you can give me some hint.
Thanks again.

24 Oct 2014 Region Growing Segmentation by growing a region from seed point using intensity mean measure Author: Dirk-Jan Kroon Maziyar

Very nice job.
Can anyone let me know how can we change color of region?

22 Oct 2014 Read Truevision TARGA images Truevision TARGA file-format image reader, for extensions TGA, VDA, ICB VST Author: Dirk-Jan Kroon John

20 Oct 2014 Snake : Active Contour Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) Author: Dirk-Jan Kroon Ishaan Markale

Hi,

I am trying to use the snake2D file on the testimage provided. However, my MATLAB is crashing when I use the test code.
Can anyone provide a reason as to why this is happening and any poosible solutions.
Thanks!

17 Oct 2014 Fast Non-Local Means 1D, 2D Color and 3D NL-means image and signal denoising filter based on similarity between pixel patches Author: Dirk-Jan Kroon Renee Fang

More update:
The run the 3D example, the same thing should be done to vectors_nlmeans_single.c and image2vectors_double.c.
Replace Vsize[2] to Vsize[3] in all definitions.

17 Oct 2014 Fast Non-Local Means 1D, 2D Color and 3D NL-means image and signal denoising filter based on similarity between pixel patches Author: Dirk-Jan Kroon Renee Fang

The toolbox is good and fast. But the reason I gave 4-star is because it crashed when I first ran the toolbox. After reading the reviews and fixed the bugs, it is running well now.
Solution for crashing:
- In vectors_nlmeans_double.c, line 256: change Vsize[2] to Vsize[3]
- In image2vectors_double.c, line 166 & 227: change Vsize[2] to Vsize[3].

Then it works!

For those using MATLAB 2013 or higher, if there is an error "char16_t" is not recognized
Solution:
Add

#include <stdint.h>
#define char16_t UINT16_T

before #include "mex.h" in every .c file.

16 Oct 2014 Read Medical Data 3D GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats Author: Dirk-Jan Kroon Stefan

Had the same problem as Noha and aziesel. I am pretty sure it is because I was trying to read a 2D mha file. You probably need to convert it into a 3D file (:,:,1).

16 Oct 2014 Senz3D Acquisition interface Creative Senz3D, Intel Interactive Gesture Camera (Time of Flight), Acquisition interface. Author: Dirk-Jan Kroon Hwathanie

While compiling I too get the following error. Any answers please? Thank you.

pxcColorImage.cpp
pxcColorImage.cpp(110) : error C2660: 'PXCProjection::MapColorCoordinatesToDepth' : function does not take 3 arguments

C:\PROGRA~1\MATLAB\R2012A\BIN\MEX.PL: Error: Compile of 'pxcColorImage.cpp' failed.

Error using mex (line 206)
Unable to complete successfully.

Error in compile_cpp_files (line 17)
mex('-v','-largeArrayDims', ...

09 Oct 2014 Hessian based Frangi Vesselness filter Enhancement of Vessel/ridge like structures in 2D/3D image using hessian eigen values Author: Dirk-Jan Kroon Portgas Ace

>> mex eig3volume.c

C:\PROGRA~1\MATLAB\R2013A\BIN\MEX.PL: Error: 'eig3volume.c' not found.

Error using mex (line 206)
Unable to complete successfully.

How do i fix this?

09 Oct 2014 Hessian based Frangi Vesselness filter Enhancement of Vessel/ridge like structures in 2D/3D image using hessian eigen values Author: Dirk-Jan Kroon Portgas Ace

how do you run this code?

07 Oct 2014 Region Growing Segmentation by growing a region from seed point using intensity mean measure Author: Dirk-Jan Kroon Michael Skocik

Excellent algorithm; thank you!

03 Oct 2014 Snake : Active Contour Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) Author: Dirk-Jan Kroon Jr-Shin Chen

"Maximum recursion limit of 500 reached. Use set(0,'RecursionLimit',N)" is because you are calling the function in the snake2D.m or snake3D.m itself. It will cause endless loop.
So, try to copy the example codes and paste to Matlab command window. Then you'll get the results!!

02 Oct 2014 Snake : Active Contour Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) Author: Dirk-Jan Kroon Christian

In SnakeMoveIteration3D.m I had to change the last line
FV.vertices=V;
to
FV.vertices=real(V);
to avoid an errror.

I'm using isosurface to to mesh a hemisphere and then reduce the number of vertices with reducepatch.m

27 Sep 2014 Fast/Robust Template Matching Template Matching with SSD Block Matching and Normalized CC, (color) 2D and 3D Author: Dirk-Jan Kroon Mai

Is the 2D version of the normalized cross-correlation in this function the size as normxcorr2? If you have a paper describing this method, I would like to have it! Thank you!

11 Sep 2014 Kinect Matlab Microsoft Kinect, OpenNI wrapper, Skeleton, Depth Author: Dirk-Jan Kroon hira

11 Sep 2014 OpenSURF (including Image Warp) SURF (Speeded Up Robust Features) image feature point detection / matching, as in SIFT Author: Dirk-Jan Kroon Daniel

Dear Dirk-Jan-Kroon

When interpolation scale I dont know why you multiple by 2/15. Could you explain what it means?

cheers!

09 Sep 2014 Viewer3D MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI Author: Dirk-Jan Kroon hamed

It works well.Thank you!
I have a problem.Any body can help me please?!
I have a series of images of a blood clot in the coronary artery angiography .(These photos are from different angles and different thicknesses of clot) .I want process these two-dimensional images to estimate the VOLUME of the clot anymore. please help me!
thank you so much....

30 Aug 2014 Snake : Active Contour Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code) Author: Dirk-Jan Kroon rain6304

How do I implement the function in MATLAB? I am just beginning to use MATLAB and need some help! Thanks!

29 Aug 2014 Viola Jones Object Detection Viola Jones Object detection using OpenCV trained classifiers Author: Dirk-Jan Kroon Anshuman

What should be the input like for the "options" structure?

29 Aug 2014 2D Line Curvature and Normals Accurate Curvature and Normals of a line/contour consisting of 2D points Author: Dirk-Jan Kroon Michael

Thank you, good code to find in my case finger tips on a hand scan

28 Aug 2014 HexCompare Basic hex editor for viewing and comparing files Author: Dirk-Jan Kroon Adam

Can't install HexEdit on my machine because of IT. This is a GREAT substitute! Thanks!

24 Aug 2014 Viola Jones Object Detection Viola Jones Object detection using OpenCV trained classifiers Author: Dirk-Jan Kroon Imam

how to know how many people in picutre?

21 Aug 2014 B-spline Grid, Image and Point based Registration B-spline registration of two 2D / 3D images or corrsp. points, affine and with smooth b-spline grid. Author: Dirk-Jan Kroon Michael

Problem below solved:
It turns out the problem was that I had first downloaded the packages on a Mac and then copied them onto the Windows machine. Somewhere along the line, hidden files (with the prefix ._) with the .c extension were added to the folders by the Mac, and the windows compiler was trying unsuccessfully to read them. When I redownloaded the packages on the windows machine, everything was good.

21 Aug 2014 multimodality non-rigid demon algorithm image registration non-rigid 2D and 3D image registration with demon (fluid) algorithm, extended with modality transf. Author: Dirk-Jan Kroon Michael

Problem below solved:
It turns out the problem was that I had first downloaded the packages on a Mac and then copied them onto the Windows machine. Somewhere along the line, hidden files (with the prefix ._) with the .c extension were added to the folders by the Mac, and the windows compiler was trying unsuccessfully to read them. When I redownloaded the packages on the windows machine, everything was good.

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