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Date File Comment by Comment Rating
30 Oct 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Singh, nsmaan

Hello, This is the first time I am trying to use matlab. Since I only have fairly small job to do I am not trying to delve too deep. I have a 5000x5000 matrix like this (just a part...n=till 5000)
 1.0 0.2 0.3 0.1.........n
0.2 1.0 0.1 0.3.........n
0.3 0.1 1.0 0.2..........n
... ... ... ...
n n n n
  
I have been using SpotFire so far for PCA analysis, but this matrix is too huge for its memory, hence trying matlab.
Any help on how i can decompose it into 3 PC's would be greatly appreciated.
Thank you

 

06 May 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Wolfgang

But the same question as Jon Jackson. Is it possible to get the explained variances when i just compute (for example) the first three components?

06 May 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Wolfgang

04 Apr 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Jackson, Jon

Works really well, thanks. Is it possible to get the percentage of the explained variance for each component?

17 Mar 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Schreiber, Gabriel Akira

05 Feb 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Nguyen, Henry

04 Feb 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Nguyen, Henry

30 Jan 2009 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Boutsidis, Christos

Excellent implementation of a fast PCA method...

26 Sep 2008 Principal Component Analysis Efficient, accurate principal component analysis Author: Mark Tygert Tygert, Mark

Sometimes the QR decomposition in the function PCA takes inordinately long compared to squaring a matrix of the same size. This presumably will not change until the recently introduced communication-avoiding QR decompositions become part of the LAPACK suites.

 

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