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updated 1 day ago

Plot jdx files by Micke

Plots a (selection of) jdx file(s) in a new or specified figure. (plotting, jdx)

plotjdx(variable,h)

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updated 17 days ago

Multiclass SVM classifier by Tarek Lajnef

Train and perform multiclasses SVM classifier (classification, signal processing, dendrogram)

Classify_DSVM(test_data,label,svmstruct)

Train_DSVM(train_data,train_label)

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updated 20 days ago

uidendrogram by Malcolm McLean

Interactive dendrogram viewer using nested boxes (dendrogram, gui, clustering)

drawtree(link, cut, colours, iwidth, iheight)

getleaves( link, id )

testuidendrogram

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updated 29 days ago

Uncertainty and sensitivity analysis of Simulink models using brute-force method by Carlos M. Velez S.

Global sensitivity analysis using the brute-force variance-based method and Monte Carlo simulation (monte carlo, sensitivity analysis, simulink)

sens_variance_bruteforce.m

sens_plot_total_sensitivity.m

sens_plot_scatter_param.m

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updated 1 month ago

Apps and models for teaching numerical sciences and computer science by Emilie Delaherche

Interactive apps and Simulink models for numerical sciences and computer science (data types, audio acquisition, communications)

Data Type Conversion

Graph Traverse

JPEG Compression

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updated 2 months ago

QUDeX-MS by Joseph Salisbury

QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with isotopic fine structure (mass spectrometry, isotopic fine structu..., hydrogendeuterium exc...)

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updated 3 months ago

3DSpectra by Sara Nasso

A 3-dimensional quantification algorithm for LC–MS labeled profile data (proteomics, lcms, quantification)

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updated 3 months ago

Management of Accession Numbers and sequences by José Luis Ruiz

A GUI designed to management of big amount of accession numbers. (bioinformatics)

FASTA_MULTIFASTA(varargin)

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updated 5 months ago

Sequence Assembly App by Turner Conrad

Assemble overlapping sequences according to reference (pcr, sanger, sequence)

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updated 7 months ago

Information-based Similarity Toolbox by Albert Yang

Information-based similarity index is an analysis of measuring distance between symbolic sequences (statistical physics, information theory, distance)

binmapping(signal)

checkfiletype(filename)

ibs(wrf1,wrf2)

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updated 7 months ago

Characteristic path length, global and local efficiency, and clustering coefficient of a graph by Nathan Cahill

Computes various graph-theoretic properties related to network connectivity (graph theory, characteristic path l..., global efficiency)

graphProperties( varargin )

exampleScript.m

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updated 8 months ago

shortest_distance_Dijkstra_algorithm.m by Alok Patel

Finds Shortest Distance between nodes using Dijkstra Algorithm. (shortest distance, distance algorithm, dijkstra algorithm)

shortestdistalgo(Weight_matrix,startterminal_matrix,endte...

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updated 8 months ago

Whole Genome Resequencing Pipeline v2.0 by Turner Conrad

Automated mapping and indel realignment of resequencing data (whole genome sequenci..., sequence, sequencing)

WGRSPipeline(reads_file,ref_file)

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updated 9 months ago

KEGGParser: parsing and editing KEGG pathway maps in Matlab by Arsen Arakelyan

Matlab graph based tool for KEGG pathway parsing, editing, visualization and analysis (bioinformatics, pathway visualization, graph manipulation an...)

KEGG_parser(varargin)

edge_add(bg,Source, Sink,edge_type)

edge_del(bg, SourceInd, SinkInd)

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updated 1 year ago

Building the component tree in quasi-linear time by Kang Wang

The connected components of the level sets can be organized in a tree structure. (component tree, connected operators, mathematical morpholo...)

buildComponentTree(F)

plotAdjacentTree(nodes, adjs)

demo.m

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updated 1 year ago

Significance Analysis of Microarrays (SAM) using Matlab by Eric

SAM is a popular method of finding differentially expressed genes through a microarray experiment. (significance analysis..., sam, gene expression)

bal_perm (seq_samp)

build_dperm (data, cl, type_mt, seq_samp)

d_null (d, type_mt)

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updated 2 years ago

Multi Class SVM by Cody

Model and classify training/test data sets into more than 2 classes with SVM. (svm, multiclass svm, support vector machin...)

multisvm(TrainingSet,GroupTrain,TestSet)

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updated 2 years ago

SCOPE: interactively tabulate SEER excel variables by Rex Cheung

This takes SEER excel column data interactively, tabulate them, write back in table format. (data import, data export, optimization)

output=xls2tabulate2xls(xlsfilename)

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updated 2 years ago

Graph manipulation by Arsen Arakelyan

These four files are intended for adding/deleting nodes and edges in biograph object (graphs, graph theory, graph manipulation)

edge_add(bg,Source, Sink, edge_col)

edge_del(bg, SourceInd, SinkInd)

node_add(bg, node_pos, node_size, UserData)

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updated 3 years ago

Find an ungapped pattern window from a set of protein sequences by Xugang Ye

This program is to find an ungapped pattern window of certain width from a set of protein sequences (bioinformatics, machine learning, dirichlet mixture mod...)

gibbs_script_4_1.m

load_DM_1.m

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updated 5 years ago

Web Deployment Using MATLAB by Todd Flanagan

A web-based gene analysis demonstration using MATLAB Builder for COM (biotech, pharmaceutical, webinar)

applyLogRatio

applyThreshold(threshold)

filterGenes;

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updated 6 years ago

Chinese Matlab Digest: Matlab Technical Bulletin by Hong Zhang

Chinese Matlab Digest is the first matlab digest published in Chinese by www.iLoveMatlab.cn (digest, matlab digest, chinese digest)

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