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updated 11 hours ago

PROMPT by Gaik Tamazian

PRotein cOnformational Motion PredicTion toolbox. (protein, conformational motion, computational biology)

Calmodulin conformational motion simulation demo

atomicmass(atomicSymbols)

circdist(X, Y)

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updated 18 days ago

Multiclass SVM classifier by Tarek Lajnef

Train and perform multiclasses SVM classifier (classification, signal processing, dendrogram)

Classify_DSVM(test_data,label,svmstruct)

Train_DSVM(train_data,train_label)

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updated 22 days ago

uidendrogram by Malcolm McLean

Interactive dendrogram viewer using nested boxes (dendrogram, gui, clustering)

drawtree(link, cut, colours, iwidth, iheight)

getleaves( link, id )

testuidendrogram

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updated 1 month ago

Uncertainty and sensitivity analysis of Simulink models using brute-force method by Carlos M. Velez S.

Global sensitivity analysis using the brute-force variance-based method and Monte Carlo simulation (monte carlo, sensitivity analysis, simulink)

sens_variance_bruteforce.m

sens_plot_total_sensitivity.m

sens_plot_scatter_param.m

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updated 2 months ago

QUDeX-MS by Joseph Salisbury

QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with isotopic fine structure (mass spectrometry, isotopic fine structu..., hydrogendeuterium exc...)

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updated 5 months ago

Sequence Assembly App by Turner Conrad

Assemble overlapping sequences according to reference (pcr, sanger, sequence)

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updated 1 year ago

Content Based Image Retrieval by Chez

Simple content based image retrieval for demonstration purposes. Either using knn or classification (image retrieval, content based image r..., classification)

L1(numOfReturnedImages, queryImageFeatureVector, dataset)

L2(numOfReturnedImages, queryImageFeatureVector, dataset,...

[obj, overall]=confMatPlot(confMat, opt)

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updated 2 years ago

Multi Class SVM by Cody

Model and classify training/test data sets into more than 2 classes with SVM. (svm, multiclass svm, support vector machin...)

multisvm(TrainingSet,GroupTrain,TestSet)

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updated 2 years ago

SCOPE: interactively tabulate SEER excel variables by Rex Cheung

This takes SEER excel column data interactively, tabulate them, write back in table format. (data import, data export, optimization)

output=xls2tabulate2xls(xlsfilename)

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updated 3 years ago

Find an ungapped pattern window from a set of protein sequences by Xugang Ye

This program is to find an ungapped pattern window of certain width from a set of protein sequences (bioinformatics, machine learning, dirichlet mixture mod...)

gibbs_script_4_1.m

load_DM_1.m

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updated 3 years ago

Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data by Richard Willey

MATLAB code for the "Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data" webinar. (chipseqbioinformatics...)

chipseqdemo.m

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updated 6 years ago

Chinese Matlab Digest: Matlab Technical Bulletin by Hong Zhang

Chinese Matlab Digest is the first matlab digest published in Chinese by www.iLoveMatlab.cn (digest, matlab digest, chinese digest)

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updated 9 years ago

Absolute and Comparison Analysis for Affymetrix Data by Abram Jujunashvili

Perform single-array and comparison analysis for Affymetrix data given by CEL and CDF files ... (biotech, pharmaceutical, affymetrix)

[bM,nM]=affyBackgrNoise(intensMatrix,varargin)

[bZ,nZ]=affyZoneBackground(intensMatrix,varargin)

affyCdfCel2chp(celStruct,cdfStruct,theID)

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