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updated 8 days ago

Sequence Assembly App by Turner Conrad

Assemble overlapping sequences according to reference (pcr, sanger, sequence)

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updated 2 months ago

Information-based Similarity Toolbox by Albert Yang

Information-based similarity index is an analysis of measuring distance between symbolic sequences (statistical physics, information theory, distance)




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updated 3 months ago

Characteristic path length, global and local efficiency, and clustering coefficient of a graph by Nathan Cahill

Computes various graph-theoretic properties related to network connectivity (graph theory, characteristic path l..., global efficiency)

graphProperties( varargin )


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updated 3 months ago

shortest_distance_Dijkstra_algorithm.m by Alok Patel

Finds Shortest Distance between nodes using Dijkstra Algorithm. (shortest distance, distance algorithm, dijkstra algorithm)


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updated 3 months ago

Whole Genome Resequencing Pipeline v2.0 by Turner Conrad

Automated mapping and indel realignment of resequencing data (whole genome sequenci..., sequence, sequencing)


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updated 4 months ago

KEGGParser: parsing and editing KEGG pathway maps in Matlab by Arsen Arakelyan

Matlab graph based tool for KEGG pathway parsing, editing, visualization and analysis (bioinformatics, pathway visualization, graph manipulation an...)


edge_add(bg,Source, Sink,edge_type)

edge_del(bg, SourceInd, SinkInd)

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updated 10 months ago

Building the component tree in quasi-linear time by Kang Wang

The connected components of the level sets can be organized in a tree structure. (component tree, connected operators, mathematical morpholo...)


plotAdjacentTree(nodes, adjs)


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updated 11 months ago

Significance Analysis of Microarrays (SAM) using Matlab by Eric

SAM is a popular method of finding differentially expressed genes through a microarray experiment. (significance analysis..., sam, gene expression)

bal_perm (seq_samp)

build_dperm (data, cl, type_mt, seq_samp)

d_null (d, type_mt)

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updated 1 year ago

Multi Class SVM by Cody

Model and classify training/test data sets into more than 2 classes with SVM. (svm, multiclass svm, support vector machin...)


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updated almost 2 years ago

SCOPE: interactively tabulate SEER excel variables by Rex Cheung

This takes SEER excel column data interactively, tabulate them, write back in table format. (data import, data export, optimization)


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updated 2 years ago

Graph manipulation by Arsen Arakelyan

These four files are intended for adding/deleting nodes and edges in biograph object (graphs, graph theory, graph manipulation)

edge_add(bg,Source, Sink, edge_col)

edge_del(bg, SourceInd, SinkInd)

node_add(bg, node_pos, node_size, UserData)

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updated 2 years ago

Find an ungapped pattern window from a set of protein sequences by Xugang Ye

This program is to find an ungapped pattern window of certain width from a set of protein sequences (bioinformatics, machine learning, dirichlet mixture mod...)



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updated 4 years ago

Web Deployment Using MATLAB by Todd Flanagan

A web-based gene analysis demonstration using MATLAB Builder for COM (biotech, pharmaceutical, webinar)




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updated 5 years ago

Chinese Matlab Digest: Matlab Technical Bulletin by Hong Zhang

Chinese Matlab Digest is the first matlab digest published in Chinese by (digest, matlab digest, chinese digest)

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