K shortest paths in a graph represented by a sparse matrix (Yen's algorithm) by El-ad David Amir

Determine the K shortest paths from node S to node T. (dijkstra, graph, shortestpath)

graphkshortestpaths.m

KEGGParser: parsing and editing KEGG pathway maps in Matlab by Arsen Arakelyan

Matlab graph based tool for KEGG pathway parsing, editing, visualization and analysis (bioinformatics, pathway visualization, graph manipulation an...)

KEGG_parser(varargin)

edge_add(bg,Source, Sink,edge_type)

edge_del(bg, SourceInd, SinkInd)

Geometric Gaussian-Kernel Bolstered Error Estimation for Linear Classification by Arsen Arakelyan

This is fast implementation of bolstered error estimation algorithm for linear SVM classification. (linear classification, feature selection, bolstered error estim...)

svm(P,T,flag)

svmcoefs(svm_struct)

bolster.m

A road to classification in high dimensional space: the regularized optimal affine discriminant by Yang Feng

A powerful method for binary classification in high dimensional space (classification, statistics, optimization)

[Sigma]=eqcor(p,rho)

analyzeReal(traindata, testdata)

lda(x, y, xtest, ytest)

Segmentation of retinal layers in OCT images with graph theory by ted teng

Demonstrates segmentation of retinal layers in OCT images with graph theory. (image processing, graph theory, ophthalmology)

graphkshortestpaths( G, S, T, K )

octGraphTheoryDemo.m

Multi Class SVM by Cody

Model and classify training/test data sets into more than 2 classes with SVM. (support vector machin..., multiclass svm, svm)

multisvm(TrainingSet,GroupTrain,TestSet)

Thresholding by Toan

Thresholding for Medical Imaging (thresholding for medi...)

Primer Design GUI by Brett Shoelson

A GUI for designing primers (primer design, genbank, bioinformatics)

Primer Design GUI

PrimerDesignFcn(sequence,TargetLength,GCRange,TmRange,noSel...

PrimerDesignGUI(varargin)

SCOPE: interactively tabulate SEER excel variables by Rex Cheung

This takes SEER excel column data interactively, tabulate them, write back in table format. (data import, data export, optimization)

output=xls2tabulate2xls(xlsfilename)

Graph manipulation by Arsen Arakelyan

These four files are intended for adding/deleting nodes and edges in biograph object (graphs, graph theory, graph manipulation)

edge_add(bg,Source, Sink, edge_col)

edge_del(bg, SourceInd, SinkInd)

node_add(bg, node_pos, node_size, UserData)

database figure chao heart N°3 for students by Dit Papa Lamine ndao

database figure chao N°3 for students (image processing, signal processing, simulation)

v=pacemaker1VINAIK

Image 3D chao of heart for students by Dit Papa Lamine ndao

database image 3D chao heart (image processing, biotech, signal processing)

v=pacemaker1VI1

NDao's Academic Chao Database figure 1 by Dit Papa Lamine ndao

figures of chao 3D for heart (image processing, signal processing, biotech)

v=pacemaker1VINAIK

Multi Class Support Vector Machine by Anand Mishra

This function removes out the limitation of MATLAB SVM function of two class and uses more classes. (multiclass svm, multiclass, support vector machin...)

multisvm( T,C,test )

User Defined Constants by John D'Errico

Define your own special constants

Demo for the User Defined Constants capability in MATLAB

defcon(ConstantName,Value,Description)

Find an ungapped pattern window from a set of protein sequences by Xugang Ye

This program is to find an ungapped pattern window of certain width from a set of protein sequences (bioinformatics, machine learning, dirichlet mixture mod...)

gibbs_script_4_1.m

load_DM_1.m

MotifCatcher by Phillip Seitzer

a MATLAB GUI platform for determination and evaluation of biologically significant motifs (motif, positionspecific scor..., scoring matrix)

...

MC_CompareOccurrenceAndLocalization(MotifMap)

MC_GetFPDir

Etherneo by Andrey

To run this model you need to download the Ethernet Header Extraction Tool (posted on MATLAB Central (go go)

Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data by Richard Willey

MATLAB code for the "Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data" webinar. (chipseqbioinformatics...)

chipseqdemo.m

periodogram technique by D.K. Ravish Bangre

spectral estimation technique (signal processing)

periodogram.m

A ODE system associated to PDE Electrical Propagation On Cable by Dit Papa Lamine ndao

PDE electrical propagation (control design, mathematics, optimization)

Cardiac PDE VI1 And Computing With Matlab-Part1 by Dit Papa Lamine ndao

Cardiac PDE VI1 (control design, mathematics, optimization)

A Linear Dynamical System Associated To Wave Equation by Dit Papa Lamine ndao

PDE and ODe system (control design, optimization, mathematics)

Cardiac Chao Vi1 And Strange Attractor-Part1 by Dit Papa Lamine ndao

cardiac chao VI1 and strange attractor (control design, mathematics, optimization)

Un Système Dynamique Linèaire Associè à l'Equation De La Chaleur by Dit Papa Lamine ndao

PDE et ODE equation (control design, mathematics, optimization)

Reentrance VI1-file 15 by Dit Papa Lamine ndao

heart VI1 block simulink (biotech, control design)

ReentranceVI115

Heart VI1 Block Simulink-file 37 by Dit Papa Lamine ndao

heart VI1 block simulink (biotech, control design)

HEARTVI137

Reentrance VI1 Block Simulink-file 14 by Dit Papa Lamine ndao

Heart Vi1 block simulink simulator (biotech, control design)

ReentranceVI114

Heart VI1 Block Simulink-file 36 by Dit Papa Lamine ndao

heart Vi1 block simulink (biotech, control design)

HEARTVI136

Reentrance VI1 Heart VI1 block simulink-N°13 by Dit Papa Lamine ndao

heart VI1 block simulink (biotech, control design)

ReentranceVI113

Heart VI1-block simulink-N°33 by Dit Papa Lamine ndao

heart VI1 block simulink (biotech, control design)

HEARTVI133

Reentrance VI1-file 11 by Dit Papa Lamine ndao

heart Vi1 block simulink (control design, biotech, optimization)

ReentranceVI111

HeartVI1-31 block simulink investigation by Dit Papa Lamine ndao

heart Vi1 block simulink file 31 (control design, biotech, mathematics)

HEARTVI131

Reentrance VI1-10 Heart Vi1 Block Simulink by Dit Papa Lamine ndao

reentrance Vi1-10 heart VI1 block simulink (biotech, control design)

ReentranceVI110

HeartVI1-30 Blocks Simulink by Dit Papa Lamine ndao

Heart Vi1 blocks simulink (control design, biotech)

HEARTVI130

uidendrogram by Malcolm McLean

Interactive dendrogram viewer using nested boxes (dendrogram, clustering, gui)

drawtree(link, cut, colours, iwidth, iheight)

getleaves( link, id )

testuidendrogram

intent.m by Peter Cotton

Graphically display mfiles, and naive intent (bioplot, files, functional)

bakery(money)

bioPlot(labels,nodeType,adj)

intent(mfiles)

Heart VI1 simulator simulink Reentrance investigation 8 by Dit Papa Lamine ndao

heart VI1 simulator simulink (biotech, control design)

ReentranceVI18

HEART VI1 Simulator Simulink Investigation 28 by Dit Papa Lamine ndao

heart VI1 simulink simulator (biotech, control design)

HEARTVI128

functor by Peter Cotton

Automated composition of function handles (functional programmin..., function_handle, handle)

bioPlot(labels,nodeType,adj)

function_handle_like

functor

SeqLogoFig by Will Dampier

This is a wrapper around the bioinformatics SeqLogo function that creates a REAL matlab figure. (bioinformatics, seqlogo, figure)

SeqLogoFig(SEQ, varargin)

Reentrance Problems of Heart VI1 simulator simulink investigation 7 by Dit Papa Lamine ndao

heart VI1 simulator simulink (biotech, mathematics, simulation)

ReentranceVI17

HeartVI1 Simulator Simulink Investigation 27 by Dit Papa Lamine ndao

heart VI1 simulator simulink block (biotech, simulink, simulation)

HEARTVI127

Investigation 6 de Reentrance du simulateur cardiaque VI1 simulink by Dit Papa Lamine ndao

heart VI1 simulink simulateur cardiaque (biotech)

ReentranceVI16

Le simulateur cardiaque VI1 simulink-Investigation 27 by Dit Papa Lamine ndao

heart VI1 simulink simulateur cardiaque (biotech)

HEARTVI127

Investigation 26 du simulateur cardiaque VI1 simulink by Dit Papa Lamine ndao

cardiac block VI1 lirary simulink (biotech, control design, demo)

HEARTVI126

Le simulateur cardiaque VI1 simulink-monitoring N°25 by Dit Papa Lamine ndao

simulateur cardiaque VI1 simulink (biotech, mathematics, simulation)

HEARTVI125

REentrance VI1 of Heart VI1 simulator simulink -N°4 by Dit Papa Lamine ndao

heart VI1 simulator simulink (biotech, mathematics, simulation)

ReentranceVI14

Heart VI1 Simulator Simulink N°24 by Dit Papa Lamine ndao

heart VI1 simulator simulink (biotech, mathematics, simulation)

HEARTVI124

Application to Simulink Block To Cardiac PDE VI1-Part1 by Dit Papa Lamine ndao

application simulink to PDE (biotech, mathematics, simulink)