Monte Carlo Simulation with Simulink by Ryan G

Select blocks to vary parameters for Monte Carlo Simulation. (control design, simulink, gui)

Monte Carlo Simulation with Simulink

MSKCC CGDS Cancer Genomics Toolbox by Erik Larsson

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio. (biology, genomics, medical)

cgdstutorial

getcancerstudies(cgdsURL, varargin)

getcaselists(cgdsURL, cancerTypeId, varargin)

Imaris Excel2data by Tegy Vadakkan

Spot positions in Imaris to measurements of the tracks. (biology, image analysis, statistics)

im2xlsdata.m

CeItrConnGUI by Gal Haspel

This GUI is used to study the iterativity of connections within the locomotion network of C. elegans (c elegans, neuronal network, connectivity)

CIC_MNtoMN(MuscleBin, NeurConnNames, NeurConnNumbs, MNnames...

CIC_NMJs(MuscleBin, MNnamesSrc, FPNumbs, FPNames, MNnamesTr...

CIC_Open(Method, FileName, PathName)

dnaTranslate by Alexander Wallar

This function translates DNA nucleotides into Amino Acids (bio, biology, biotech)

dnaTranslate(dnaVec)

Persistent random walk by Tegy Vadakkan

The function simulates random walk with persistence. (statistics, biology)

prwalk(n,tau,S,P)

Hodgkin-Huxley-like Model Neuron by Michele Giugliano

Demo simulator of a firing biological neuron. (simulation, graphical user interf..., neurons)

HH.m

hh_step(V, h, n, mean, stdv, dt, inseed)

unfoldprotein.m by Kristopher White

Calculates protein melting point, Tm, from unfolding data in three different ways. (biotech, protein, unfold)

unfoldprotein(data, bracket)

RefineAlignments by Will Dampier

A tool which can refine a set of multiple alignments to reduce the global alignment score. (bioinformatics, sequence alignment, multialign)

RefineAlignments(IN_ALIGN, varargin)

Quantile normalization of 2 dimensional arrays by Dr. Jens Koopmann

Returns a normalized dataset (data normalization, data normalisation, biology)

[quant]=quantile_norm(data,wiederholung)

MATLAB in Computational Biology by Linda Webb

Life science researchers adopt the tools and methods of the engineering community. (whitepaper, article, paper)

MATLAB and Simulink in the World: Academia by Linda Webb

Academic institutions demonstrate applications of MathWorks tools across engineering disciplines. (whitepaper, article, paper)