Gillespie Stochastic Simulation Algorithm by Nezar

Simulate discrete stochastic models of chemical reaction networks. (simulation, modeling, chemistry)

directMethod( stoich_matrix, propensity_fcn, tspan, x0,...

example

firstReactionMethod( stoich_matrix, propensity_fcn, tspan, ...

General Viterbi Algorithm by Jacob Shin

This function runs Viterbi algorithm given valid parameters and returns optimal path into a file (ou (viterbi, bioinformatics, computational biology)

getViterbi(Ptransition, Pemission, Pinitial, S, SeqTxt)