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updated 22 days ago

Imagine by Christian Wuerslin

4D/3D image visualization and evaluation GUI. (3d, potw, pick of the week)

Imagine

fLiveWireCalcP.m

fLiveWireGetPath.m

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updated 1 month ago

DICOM to NIfTI converter by Xiangrui Li

dicm2nii.m converts dicom files into nifti files. (dicom, nifti, siemens)

dicm2nii(src, dataFolder, varargin)

dicm_dict(vendor, flds)

dicm_hdr(fname, dict, iFrames)

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updated 3 months ago

MatrixUser v2.2 by Fang Liu

An ImageJ like, Multi-functional, GUI-based Program for Image (Matrix) Processing and Analysis (image processing, image analysis, medical)

About_MU(varargin)

Flag=MU_load_matrix(matrixName, matrix, newWindowOpenFlag)

MU_3D_Render(varargin)

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updated 8 months ago

dicomLUT by Jered Wells

DICOMLUT applies an embedded lookup table to a DICOM image (dicom, imaging, lut)

dicomLUT(filename,varargin)

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updated 8 months ago

DICOM View by Andrew Bazyk

GUI for viewing DICOM image sets (image processing, image, dicom)

DICOM_View

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updated 8 months ago

3D visualization of density distribution by Mafalda Couto

Volumetric visualization of bone (or other tissue) density distribution from DICOM (3d, bone, bone density)

thresh_tool(im,cmap,defaultLevel)

vol3d(varargin)

BoneDensityAnalizer.m

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updated 9 months ago

Dicom Operator - EsmeProcess by Jun Li

EsmeProcess functions dicom image operation including viewing, drawing, writing and statistic. (dicom, mask, header)

EsmeProcess Tutorial

[meanGL1, stdGL1, meanGL2, stdGL2, ...

addmenuitems.m

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updated 10 months ago

Siemens DICOM sort and convert to NIfTI by Simon Robinson

Converts Siemens MRI DICOM data into NIfTI format, and/or anonymises and sorts into scan directories (dicom, nifti, mri)

centre_header(nii_hdr)

convert_2dto3d_func2(obj, eventdata, interleave_sort, rea...

convert_to_analyze_func(data)

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updated 11 months ago

findDicomFiles by Henric Rydén

Finds DICOM files in specified folder and subfolders (dicom, dicominfo, dicomread)

findDicomFiles.m

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updated 1 year ago

Toolkit for Pulsatile flow in arteries by Alip

Toolkit to generate pulsatile flow profile, characteristics and dicom images using Navier-Stokes eqs (pulsatile flow, blood, arteries)

FlowDICOM(u,r,folder)

FourierSeries(p,dt,N,T)

SurfMovie(II)

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updated 1 year ago

Freehand Prostate Annotation by Guillaume Lemaitre

GUI allowing freehand annotations of DICOM prostate images (medical imaging, computer vision, dicom)

annotationTool(varargin)

xml2struct( file )

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updated 1 year ago

Semi Automatic Medical Image 3D segmentation by Brad Moffat

This performs matlab clustering fuzzy cmeans or kmeans on a freehand roi. (image processing, dicom, nii)

[hdist,xydata2,dist,cdp]=auto_rano_roi(varargin)

sami_3d_clust(data,nclust,varargin)

sami_3d_clust_m(data,nclust,varargin)

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updated 1 year ago

DICOM Example Files by Jeff Mather

Example DICOM files containing MR images of the brain. (medical, dicom, dicominfo)

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updated 1 year ago

Dicom Import GUI by Christian Wuerslin

Sorts DICOM files into series and lets you select the series you want to load in a GUI (dicom, medical images, data import)

DicomImport(sPath, lRecursive, csAdditionalTags)

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updated 1 year ago

Subject and scan information from a DICOM header to ASCII file by Guilherme Coco Beltramini

Get some information from the DICOM header and write to an ASCII file (dicom)

dicom_get_info_from_header(dcm_files,file_name)

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updated 1 year ago

DTI gradient table by Guilherme Coco Beltramini

Generate the gradient table from a DTI DICOM file in scanner and in patient coordinates (dti, gradient table, dicom)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

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updated 1 year ago

DICOM to NIfTI converter by Guilherme Coco Beltramini

Simple DICOM to NIfTI converter. Gradient table for DTI files is also created. (dicom, nifti)

dicom2nifti(dcmfile,elim_grad,elim_slc)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

make_nii(varargin)

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updated 1 year ago

Enhanced Dicom Viewer by Yi Sui

A enhanced version of DICOMViewer (dicom, gui, image processing)

DICOMViewer(varargin)

dragdemo.m

draggable(h,varargin)

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updated 1 year ago

Create a quadratic Matrix of DICOM images by Thomas Lindner

Load all DICOM images, change the Matrix size and save them again, keeping the header (Metadata). (dicom, matrix size, load dicom)

change_DICOM_Matrix.m

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updated almost 2 years ago

HDR image viewer for Deep Color Monitor by Mario Tuerschmann

Display your captured image from within MATLAB on a Deep Color monitor with HDR quality (cuda, hdr, deep color)

HdrFileDownload( input_args )

HdrImgView

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updated 2 years ago

Interactive DICOM 3D Viewer by Eric Johnston

Viewer allows user to look through cross sections of a dicom image set. (dcm, dicom, 3d viewer)

Interactive DICOM 3D Viewer

dcm3DViewer

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updated 2 years ago

Gantry detector tilt correction by Denny Milakara

Transforms CT DICOMs with Gantry tilt angle (image processing, ct, gantry)

gantry2(varargin)

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updated 2 years ago

ReadGetDICOM by GAMAL ALKIRSHI

The function of this program is read the DICOM images and save it in Single MAT file. (dicom, medical physicist, uitable)

NPath=SetNewPath(CDr,N,T)

StartProgram

logo=getbuttonlogo(CDr,Name,n,P)

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updated 3 years ago

DICOMDir - OO dicom directory by Sven

DICOMDir parses and browses a given DICOMDIR dicom dictionary fie (dicom, dicomdir, dcm)

DICOMDir

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updated 3 years ago

DICOMDIR Reader by Laszlo Balkay

Select dicom series under a directory or CD using the DICOMDIR file. (medical, dicom, dicom cd)

[handle]=progbar(varargin)

loaddcm.m

loaddcmdir(dicomdirpath)

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updated 3 years ago

ct3 - A Simple Mousewheel-based 3D Image Browser for Medical Images by Tripp

A minimalist 3D Medical Image browser. Use the mousewheel to scroll between slices in all 3 planes. (medical imaging, 3d browser, mousewheel)

ct3(im,w)

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updated 3 years ago

Vanderbilt to mat by Borislav Oreshkin

Reads DICOM data from Vanderbilt Retrospective Image Registration Evaluation Project (vanderbilt, dicom, image registration)

read_vanderbilt(folder_path)

example_use.m

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updated 3 years ago

Sort DICOM CD images by subject and scan names by Gang Wang

Sort DICOM CD images by subject and scan names. (dicom, cd, sort)

sort_one_cd(realtopdir,dest_folder_str)

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updated 3 years ago

Dicom Toolbox by Dirk-Jan Kroon

Search/Read/Write dicom folders and dicom volumes (dicom, read, write)

V=dicom_normalize(V,info)

choose_from_list(varargin)

datasets=dicom_folder_info(link,subfolders)

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updated almost 4 years ago

Dicom Tags Read and Write by Dirk-Jan Kroon

Read / Write raw Dicom tags with large dictionary, for small file manipulations, like anonymize (dicom, dcm, tags)

CreateDicomDict(filename)

WriteDicomElementList(Elements,fname)

elementlist=ReadDicomElementList(fname)

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updated almost 4 years ago

Read Medical Data 3D by Dirk-Jan Kroon

GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats (dicom, dcm, v3d)

ErrorData3D(varargin)

InfoData3D(varargin)

ReadData3D(varargin)

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updated almost 4 years ago

Viewer3D by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI (volume render, volume rendering, mip)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ErrorData3D(varargin)

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updated 4 years ago

DICOM debug utility by Jeff Mather

A tool to dump the contents of DICOM files for debugging (medical, dicom, metadata)

dicomdump(msgname, varargin)

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updated 4 years ago

DICOMDIR Parser by Jadrian Miles

Automatically generates a parse tree from a DICOMDIR file, for easy non-interactive processing. (medical, medical imaging, dicom)

copySeriesFromDicomdir(src, patt, dst)

parseDicomdir(fname)

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updated 4 years ago

DICOM server connection by Laszlo Balkay

This script connects to a DICOM server and transfer the a dicom series to the MATLAB workspace (dicom, medical, dicom server)

[handle]=progbar(varargin)

dcmserver_change_sortordering(sorting_ID)

dcmserver_connection(dcmaet,dcmaec,dcmhost,dcmport)

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updated almost 5 years ago

MRI Brain Segmentation by Robert Bemis

Neuroimaging Case Study for seminars and webinars. (medical, segmentation, gray)

StepThru(mfile,ws)

UpdateSliceOMatic(X,hSlico)

[x,y]=limits(a)

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updated 5 years ago

Anonymizing a batch of Dicom Files together by Jaydev

To perform batch processing for anonymizing dicom files (dicom, batch processing, anonymizing)

dcm_batch_anony.m

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updated 5 years ago

DICOM gantry tilt correction by Phil Lewis

Checks for gantry tilt in DICOM fileset and modifies the images (dicom, gantry, tilt)

gantrycorrect.m

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updated 5 years ago

Transform matrix between two dicom image coordinates by Alper Yaman

This code calculates the transform matrix between two image coordinates. (image processing, mri, dicom)

GetTransformMatrix(info1, info2)

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updated 5 years ago

Dicom directory (of slices) to 3D volume image by Ariel Balter

Read a series of dicom slice images to a 3D volume image and meta data. (dicom, 3d, medical)

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updated 5 years ago

Read and write single file dicom volumes by Christopher

Two functions that allow to read/write 3-D volume data from/to the DICOM format. (dicom, volume data)

dicomreadvolume(zipfile)

dicomwritevolume(fname, V, VS)

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updated almost 6 years ago

dicomrename by Bob Hamans

Renames DICOM-files based on the value of fields in the file header. Compatible with Siemens MR IMA (dicom, siemens, ima)

dicomrename(fpathin, fnames, action, stringname, stringfo...

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updated almost 6 years ago

ROI Draw by Christopher Changchien

ROI Draw allows you to draw rectangular ROI's at any angle. (signal processing, statistics, probability)

ROIDraw(varargin)

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updated almost 7 years ago

Using the DICOM toolkit dcm4che from Matlab by Patrick Bolan

Example showing how to load and use the dcm4che dicom toolkit (tutorial, example, dicom)

demo_dcm4che.m

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updated almost 10 years ago

renamedicom by Nagi Hatoum

Renames Dicom Images with Sequential Alpha Numeric Nomenclature. (biotech, pharmaceutical, dicom)

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