DICOM Example Files by Jeff Mather

Example DICOM files containing MR images of the brain. (brain, dicom, dicomread)

Dicom Import GUI by Christian Wuerslin

Sorts DICOM files into series and lets you select the series you want to load in a GUI (dicom, medical images, data import)

DicomImport(sPath, lRecursive, csAdditionalTags)

Subject and scan information from a DICOM header to ASCII file by Guilherme Coco Beltramini

Get some information from the DICOM header and write to an ASCII file (dicom)

dicom_get_info_from_header(dcm_files,file_name)

DTI gradient table by Guilherme Coco Beltramini

Generate the gradient table from a DTI DICOM file in scanner and in patient coordinates (dti, gradient table, dicom)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

DICOM to NIfTI converter by Guilherme Coco Beltramini

Simple DICOM to NIfTI converter. Gradient table for DTI files is also created. (dicom, nifti)

dicom2nifti(dcmfile,elim_grad,elim_slc)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

make_nii(varargin)

Enhanced Dicom Viewer by Yi Sui

A enhanced version of DICOMViewer (gui, dicom, image processing)

DICOMViewer(varargin)

draggable(h,varargin)

dragdemo.m

Create a quadratic Matrix of DICOM images by Thomas Lindner

Load all DICOM images, change the Matrix size and save them again, keeping the header (Metadata). (dicom, matrix size, load dicom)

change_DICOM_Matrix.m

Toolkit for Pulsatile flow in arteries by Alip

Toolkit to generate pulsatile flow profile, characteristics and dicom images using Navier-Stokes eqs (pulsatile flow, blood, arteries)

PulsatileFlowDICOM(r,ru,mu,freq,ks,kp,timestep,grid,nw,ai,p...

SurfMovie(II)

[OutWave]=PhaseHarmony(InWave,timestep)

HDR image viewer for Deep Color Monitor by Mario Tuerschmann

Display your captured image from within MATLAB on a Deep Color monitor with HDR quality (cuda, hdr, deep color)

HdrFileDownload( input_args )

HdrImgView

Interactive DICOM 3D Viewer by Eric Johnston

Viewer allows user to look through cross sections of a dicom image set. (dcm, ct, 3d viewer)

Interactive DICOM 3D Viewer

dcm3DViewer

Gantry detector tilt correction by Denny Milakara

Transforms CT DICOMs with Gantry tilt angle (ct, dicom, gantry)

gantry2(varargin)

ReadGetDICOM by GAMAL ALKIRSHI

The function of this program is read the DICOM images and save it in Single MAT file. (dicom, medical physicist, uitable)

NPath=SetNewPath(CDr,N,T)

StartProgram

logo=getbuttonlogo(CDr,Name,n,P)

DICOMDir - OO dicom directory by Sven

DICOMDir parses and browses a given DICOMDIR dicom dictionary fie (dicom, dicomdir, dcm)

DICOMDir

DICOMDIR Reader by Laszlo Balkay

Select dicom series under a directory or CD using the DICOMDIR file. (dicomdir, dicom, reader)

[handle]=progbar(varargin)

loaddcm.m

loaddcmdir(dicomdirpath)

ct3 - A Simple Mousewheel-based 3D Image Browser for Medical Images by Tripp

A minimalist 3D Medical Image browser. Use the mousewheel to scroll between slices in all 3 planes. (medical imaging, 3d browser, mousewheel)

ct3(im,w)

Vanderbilt to mat by Borislav Oreshkin

Reads DICOM data from Vanderbilt Retrospective Image Registration Evaluation Project (vanderbilt, dicom, image registration)

read_vanderbilt(folder_path)

example_use.m

Sort DICOM CD images by subject and scan names by Gang Wang

Sort DICOM CD images by subject and scan names. (dicom, cd, sort)

sort_one_cd(realtopdir,dest_folder_str)

Dicom Toolbox by Dirk-Jan Kroon

Search/Read/Write dicom folders and dicom volumes (dicom, read, write)

V=dicom_normalize(V,info)

choose_from_list(varargin)

datasets=dicom_folder_info(link,subfolders)

Siemens DICOM sort and convert to NIfTI by Simon Robinson

Converts Siemens MRI DICOM data into NIfTI format, and/or anonymises and sorts into scan directories (dicom, siemens, mri)

centre_header(nii_hdr)

convert_2dto3d_func2(obj, eventdata, interleave_sort, readf...

convert_to_analyze_func(data)

Dicom Tags Read and Write by Dirk-Jan Kroon

Read / Write raw Dicom tags with large dictionary, for small file manipulations, like anonymize (dicom, dcm, tags)

CreateDicomDict(filename)

WriteDicomElementList(Elements,fname)

elementlist=ReadDicomElementList(fname)

Read Medical Data 3D by Dirk-Jan Kroon

GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats (dicom, export, mhd)

ErrorData3D(varargin)

InfoData3D(varargin)

ReadData3D(varargin)

Viewer3D by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI (2d, 3d, dicom)

B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(FV,alpha,beta,gamma)

ErrorData3D(varargin)

DICOM debug utility by Jeff Mather

A tool to dump the contents of DICOM files for debugging (medical, dicom, metadata)

dicomdump(msgname, varargin)

DICOMDIR Parser by Jadrian Miles

Automatically generates a parse tree from a DICOMDIR file, for easy non-interactive processing. (medical, medical imaging, dicom)

copySeriesFromDicomdir(src, patt, dst)

parseDicomdir(fname)

DICOM server connection by Laszlo Balkay

This script connects to a DICOM server and transfer the a dicom series to the MATLAB workspace (dicom server, dicom, medical)

[handle]=progbar(varargin)

dcmserver_change_sortordering(sorting_ID)

dcmserver_connection(dcmaet,dcmaec,dcmhost,dcmport)

MRI Brain Segmentation by Robert Bemis

Neuroimaging Case Study for seminars and webinars. (brain, 3d segmentation, segmentation)

StepThru(mfile,ws)

UpdateSliceOMatic(X,hSlico)

[x,y]=limits(a)

Anonymizing a batch of Dicom Files together by Jaydev

To perform batch processing for anonymizing dicom files (dicom, batch processing, anonymizing)

dcm_batch_anony.m

DICOM gantry tilt correction by Phil Lewis

Checks for gantry tilt in DICOM fileset and modifies the images (dicom, gantry, tilt)

gantrycorrect.m

Transform matrix between two dicom image coordinates by Alper Yaman

This code calculates the transform matrix between two image coordinates. (image coordinates, transform matrix, dicom)

GetTransformMatrix(info1, info2)

Dicom directory (of slices) to 3D volume image by Ariel Balter

Read a series of dicom slice images to a 3D volume image and meta data. (3d, dicom, medical)

...

Read and write single file dicom volumes by Christopher

Two functions that allow to read/write 3-D volume data from/to the DICOM format. (dicom, volume data)

dicomreadvolume(zipfile)

dicomwritevolume(fname, V, VS)

dicomrename by Bob Hamans

Renames DICOM-files based on the value of fields in the file header. Compatible with Siemens MR IMA (ima, dicom, siemens)

dicomrename(fpathin, fnames, action, stringname, stringform...

ROI Draw by Christopher Changchien

ROI Draw allows you to draw rectangular ROI's at any angle. (signal processing, statistics, probability)

ROIDraw(varargin)

Using the DICOM toolkit dcm4che from Matlab by Patrick Bolan

Example showing how to load and use the dcm4che dicom toolkit (dcm4che, dicom, example)

demo_dcm4che.m

renamedicom by Nagi Hatoum

Renames Dicom Images with Sequential Alpha Numeric Nomenclature. (biotech, pharmaceutical, dicom)

renamedicom.m