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updated 10 months ago

Joint Anisotropic Wiener filter for Diffusion Weighted MRI by Antonio Tristán Vega

Denoises Diffusion Weighted MRI volumes corrupted with stationary Rician noise (mri, dtmri, diffusion weighted mr...)

jaLMMSEDWI( DWInoisy, Grads, sigma, varargin )

test_jaLMMSE.m

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updated 1 year ago

DTI gradient table by Guilherme Coco Beltramini

Generate the gradient table from a DTI DICOM file in scanner and in patient coordinates (dti, gradient table, dicom)

dti_grad_table(dcmhdr,Ngrad,corr_rot,out_folder)

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updated almost 2 years ago

DTI Fiber Tractography (Streamline Tracking Technique) by Chang Chia-Hao

Diffusion MRI, DTI, Fiber Tracking, Diffusion Tensor Calculation, Fiber Visualization (diffusion mri, dti, fiber tractography)

DICOMViewer(varargin)

DiffusionTensorCalculation

DtiSearch.m

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updated 2 years ago

Perpendicular Fiber Tracking by Siddharth Ray

Traces perpendicular sections for nerve fiber bundle analysis (diffusion tensor imag..., dti, diffusion weighted mr...)

Demo_PerpendicularFiberTracking()

[myCostMap]=PerpendicularFiberTracking(eigenvectors,seed_...

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updated 3 years ago

Simulation/Synthesis of Diffusion-Weighted MRI datasets by Angelos Barmpoutis

You can use this script to generate synthetic DWMRI or DTI datasets. (diffusion weighted mr..., dwmri, diffusion tensor imag...)

S=DEMO_SimulateDWMRI_field()

S=DEMO_SimulateDWMRI_voxel()

out=SimulateDWMRI(fiber_orientation,dwmri_gradient_orient...

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updated 3 years ago

Diffusion Tensor Field (DTI and Higher-Order) Visualization by Angelos Barmpoutis

Plots a field of any even-order Positive-Definite Tensors as spherical functions. (diffusion weighted mr..., dwmri, diffusion tensor imag...)

DEMO_plotTensors()

G=constructMatrixOfMonomials(g,order)

TRI=SphericalMesh(id)

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updated 3 years ago

Diffusion Tensor Field (DTI) Visualization by Angelos Barmpoutis

This function plots 3D symmetric positive definite matrices as a field of Gaussian ellipsoids. (diffusion tensor fiel..., diffusion tensor imag..., diffusion weighted mr...)

DEMO_plotDTI()

[data,bval]=openFDT(name)

plotDTI(D,delta)

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updated 3 years ago

fanDTasia ToolBox by Angelos Barmpoutis

A library for DW-MRI Processing, DTI & DKI Estimation, Higher-Order Tensor analysis & Visualization. (diffusion tensor imag..., dti, diffusion weighted mr...)

A=D4toDKImatrix(bvalue)

Bg=constructMatrixOfIntegrals(g_, order, delta)

C=constructSetOf321Polynomials(order)

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updated 3 years ago

Diffusion Kurtosis Tensor Estimation by Angelos Barmpoutis

Estimation of Diffusion Kurtosis DKI from a given Diffusion Weighted MRI dataset (diffusion kurtosis im..., diffusion tensor imag..., diffusion weighted mr...)

A=D4toDKImatrix(bvalue)

C=constructSetOf321Polynomials(order)

C=constructSetOf321Polynomials(order)

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updated 4 years ago

Cartesian Tensor ODF Estimation from Diffusion Weighted MRI by Angelos Barmpoutis

Estimation of Fiber Orientation Distribution Function (ODF) from a given DW-MRI dataset (diffusion tensor imag..., diffusion weighted mr..., dti)

Bg=constructMatrixOfIntegrals(g_, order, delta)

C=constructSetOf321Polynomials(order)

C=constructSetOf321Polynomials(order)

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updated 4 years ago

Higher Order Diffusion Tensor Estimation by Angelos Barmpoutis

Estimation of Higher-Order DTI from a given Diffusion Weighted MRI dataset (diffusion weighted mr..., dwmri, diffusion tensor imag...)

C=constructSetOf321Polynomials(order)

D=DEMO_DT4_Estimation()

G=constructMatrixOfMonomials(g,order)

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updated 4 years ago

Diffusion Tensor Estimation by Angelos Barmpoutis

Estimation of Positive Definite Diffusion Tensors from Diffusion Weighted MRI (diffusion weighted mr..., dwmri, diffusion tensor imag...)

C=constructSetOf321Polynomials(order)

C=constructSetOf321Polynomials(order)

D=DEMO_DTI_Estimation()

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updated almost 5 years ago

Extended version of FT.m func of file ID: #21130 by Alper Yaman

This function is the new version of FT.m function of package ID: #21130. (dti, mri, fiber)

fibers=FT(FA,VectorF,Roi,parameters)

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updated 6 years ago

DTI and Fiber Tracking by Dirk-Jan Kroon

Diffusion MRI (DTI), calculates FA, ADC, Vector Field, and will track and visualize neural tracts. (image analysis, dti, diffusion)

[ADC,FA,VectorF,DifT]=DTI(DTIdata,parameters)

[info] =gipl_read_header(fname)

fibers=FT(FA,VectorF,Roi,parameters)

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